RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PCDHGA1Q9Y5H4 931 aa16.94■□□□□ 0.3
CCDC28B-204ENST00000469003 FLNBO75369 2602 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 CBX4O00257 560 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 ZMPSTE24O75844 475 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 SDC4P31431 198 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 ANP32AP39687 249 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 STAT1P42224 750 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 RECQLP46063 649 aaPredicted RBP16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 SERPINH1P50454 418 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 NRG1Q02297 640 aaPredicted RBP16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 GNA12Q03113 381 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 SLC20A2Q08357 652 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 ARL13BQ3SXY8 428 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 CCDC14Q49A88 953 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 CCDC157Q569K6 752 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 PCDH20Q8N6Y1 951 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 SLC30A5Q8TAD4 765 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 RXFP2Q8WXD0 754 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 CNDP2Q96KP4 475 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 C11orf70Q9BRQ4 267 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 CEP44Q9C0F1 390 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 TNKS2Q9H2K2 1166 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 FANCLQ9NW38 375 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 IL36AQ9UHA7 158 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 IGSF10Q6WRI0 2623 aa16.93■□□□□ 0.3
CCDC28B-204ENST00000469003 ADAMTS20P59510 1910 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 A0A1W2PQU0 124 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 C2CD4BA6NLJ0 364 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 ZNF821O75541 412 aaPredicted RBP16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 UNGP13051 313 aaPredicted RBP16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 ADRA1BP35368 520 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 PTPN9P43378 593 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 COPB1P53618 953 aaKnown RBP16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 ARF5P84085 180 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 BNIP3Q12983 259 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 CDO1Q16878 200 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 C15orf59Q2T9L4 293 aaPredicted RBP16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 RAB6CQ53S08 254 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 ARSIQ5FYB1 569 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 MANEALQ5VSG8 457 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 SFMBT2Q5VUG0 894 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 DHRS13Q6UX07 377 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 DPY19L3Q6ZPD9 716 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 ERN2Q76MJ5 926 aaKnown RBP16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 STRADAQ7RTN6 431 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 KANSL1Q7Z3B3 1105 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 PHLDB2Q86SQ0 1253 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 HORMAD1Q86X24 394 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 DRC7Q8IY82 874 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 EID2Q8N6I1 236 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 TMEM145Q8NBT3 493 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 JOSD2Q8TAC2 188 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 MDM1Q8TC05 714 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 GRIN3AQ8TCU5 1115 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 GPT2Q8TD30 523 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 KLHDC7BQ96G42 594 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 PPP1R16AQ96I34 528 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 HDAC8Q9BY41 377 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 RAB6CQ9H0N0 254 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 OSBPL2Q9H1P3 480 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 RETREG1Q9H6L5 497 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 DKK4Q9UBT3 224 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 OR12D3Q9UGF7 316 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 WASF2Q9Y6W5 498 aa16.92■□□□□ 0.3
CCDC28B-204ENST00000469003 CHD5Q8TDI0 1954 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 LOC400499M0QZD8 3231 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 CXorf51AA0A1B0GTR3 108 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 RNF103O00237 685 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 LEFTY1O75610 366 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 C1SP09871 688 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 CDK4P11802 303 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 ETFBP38117 255 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 MAPKAPK2P49137 400 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 GSCP56915 257 aaPredicted RBP16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 PTP4A2Q12974 167 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 DNAJC3Q13217 504 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 CAMK2BQ13554 666 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 SYCP1Q15431 976 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 ZNF284Q2VY69 593 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 MARCH9Q86YJ5 346 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 ANKRD20A12PQ8NF67 263 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 CENPIQ92674 756 aaPredicted RBP16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 PCDHB18PQ96TA0 734 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 HEPHQ9BQS7 1158 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 ANO10Q9NW15 660 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 LIMA1Q9UHB6 759 aaKnown RBP16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 CA5BQ9Y2D0 317 aa16.91■□□□□ 0.3
CCDC28B-204ENST00000469003 ACACAQ13085 2346 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 FAM149AA5PLN7 773 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 LGALS16A8MUM7 142 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 SLC31A1O15431 190 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 RFPL3O75679 317 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 GJB6O95452 261 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 PRLRP16471 622 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 RHOQP17081 205 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 AKT2P31751 481 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 NSFP46459 744 aaKnown RBP16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 ACADVLP49748 655 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 NEK3P51956 506 aa16.9■□□□□ 0.3
CCDC28B-204ENST00000469003 MYL5Q02045 173 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms