RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HAPLN3Q96S86 360 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GPR22Q99680 433 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 FICDQ9BVA6 458 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GATA5Q9BWX5 397 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 C1QTNF1Q9BXJ1 281 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 FTHL17Q9BXU8 183 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 CDH19Q9H159 772 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 TASP1Q9H6P5 420 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 NMUR1Q9HB89 426 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 GLOD4Q9HC38 313 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 BATF3Q9NR55 127 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 ABCC13Q9NSE7 274 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 SLC2A6Q9UGQ3 507 aa9.09□□□□□ -0.95
SYNE1-217ENST00000466159 AAR2Q9Y312 384 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 NYNRINQ9P2P1 1898 aaKnown RBP9.09□□□□□ -0.95
SYNE1-217ENST00000466159 E9PBE3 544 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 F8W8V4 182 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 TNFRSF10BO14763 440 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 DCXO43602 365 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 B4GALT3O60512 393 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 KLHL41O60662 606 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 PMPCBO75439 489 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CIB2O75838 187 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SORBS2O94875 1100 aaKnown RBP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SBK3P0C264 359 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CCR1P32246 355 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CYP2C18P33260 490 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CSRP3P50461 194 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 TUBP50607 506 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 RAB27AP51159 221 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ACTR3P61158 418 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 MPP1Q00013 466 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 TSPY1Q01534 308 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF33AQ06730 810 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 PCID2Q5JVF3 399 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 MANEALQ5VSG8 457 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SDHAF4Q5VUM1 108 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 C1orf146Q5VVC0 180 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ANO7Q6IWH7 933 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 EPGNQ6UW88 154 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 C14orf80Q86SX3 495 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SLC41A1Q8IVJ1 513 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 KLHDC8BQ8IXV7 354 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 THEM5Q8N1Q8 247 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 FCRL5Q96RD9 977 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 IL12RB2Q99665 862 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ACE2Q9BYF1 805 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 UNKQ9C0B0 810 aaKnown RBP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 RHOJQ9H4E5 214 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SPC25Q9HBM1 224 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ZFYVE28Q9HCC9 887 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 OXSMQ9NWU1 459 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 OSER1Q9NX31 292 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 TLK1Q9UKI8 766 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 DSEQ9UL01 958 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 A0A1W2PQH9 124 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 MATN3O15232 486 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 PSMD3O43242 534 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ZBTB14O43829 449 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ZMPSTE24O75844 475 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 HLA-DQB2P05538 268 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 PDHA1P08559 390 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SLC35E2BP0CK96 405 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CD1EP15812 388 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 ARNTP27540 789 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CHRNA4P43681 627 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 COPAP53621 1224 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 KCNA10Q16322 511 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 TSNAXIP1Q2TAA8 658 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 TRMT5Q32P41 509 aaKnown RBP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CFAP157Q5JU67 520 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 BRMS1LQ5PSV4 323 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SPNS2Q8IVW8 549 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 MFSD6LQ8IWD5 586 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SCN4BQ8IWT1 228 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SPATA6LQ8N4H0 392 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 TDRD5Q8NAT2 981 aaKnown RBP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 KCTD4Q8WVF5 259 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SUSD3Q96L08 255 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 PPP1R36Q96LQ0 422 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 OR52B2Q96RD2 323 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 UPF3AQ9H1J1 476 aaKnown RBP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 SMOC2Q9H3U7 446 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 FAM96AQ9H5X1 160 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CATSPERBQ9H7T0 1116 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 RBM22Q9NW64 420 aaKnown RBP eCLIP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 RUVBL2Q9Y230 463 aaKnown RBP9.08□□□□□ -0.96
SYNE1-217ENST00000466159 HS3ST4Q9Y661 456 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 CDY1Q9Y6F8 540 aa9.08□□□□□ -0.96
SYNE1-217ENST00000466159 GOLGA8QA0A0J9YX86 632 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 GOLGA8OA6NCC3 632 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 E9PAM4 449 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 GOLGA8NF8WBI6 632 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 AP3B1O00203 1094 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ADAMTS4O75173 837 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ANXA9O76027 345 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 LUC7L3O95232 432 aaKnown RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ACADSP16219 412 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MPSTP25325 297 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 HOXC13P31276 330 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms