RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ADH1BP00325 375 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 DNA2P51530 1060 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 COPAP53621 1224 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 DMWDQ09019 674 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 FAM46CQ5VWP2 391 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 SPOCD1Q6ZMY3 1216 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 CEP68Q76N32 757 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 PLPP6Q8IY26 295 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 ZNF599Q96NL3 588 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 MKRN2Q9H000 416 aaKnown RBP20.17■□□□□ 0.82
COL9A3-204ENST00000463487 RAB23Q9ULC3 237 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 CAPN6Q9Y6Q1 641 aa20.17■□□□□ 0.82
COL9A3-204ENST00000463487 K7ERQ8 282 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 MFSD11O43934 449 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 TMCC1O94876 653 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 FTCDO95954 541 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 CDKN2BP42772 138 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 RHOAP61586 193 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 SNRPD1P62314 119 aaKnown RBP20.16■□□□□ 0.82
COL9A3-204ENST00000463487 RAD51Q06609 339 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 PPP2R5EQ16537 467 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 TIGD7Q6NT04 549 aaPredicted RBP20.16■□□□□ 0.82
COL9A3-204ENST00000463487 MFSD7Q6UXD7 560 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 STK40Q8N2I9 435 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 GAB3Q8WWW8 586 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 KRT35Q92764 455 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 NCKAP1Q9Y2A7 1128 aa20.16■□□□□ 0.82
COL9A3-204ENST00000463487 FCF1Q9Y324 198 aaKnown RBP20.16■□□□□ 0.82
COL9A3-204ENST00000463487 MCF2LO15068 1137 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 SMAD6O43541 496 aaKnown RBP20.15■□□□□ 0.82
COL9A3-204ENST00000463487 LILRB5O75023 590 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 IGSF6O95976 241 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 GSRP00390 522 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 IL1BP01584 269 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 PRNPP04156 253 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 MSNP26038 577 aaKnown RBP20.15■□□□□ 0.82
COL9A3-204ENST00000463487 OXTRP30559 389 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 CCDC15Q0P6D6 951 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 GALNT2Q10471 571 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 CST6Q15828 149 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 CARD16Q5EG05 197 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 SLC9A4Q6AI14 798 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 SLC36A4Q6YBV0 504 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 LEKR1Q6ZMV7 388 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 MMAAQ8IVH4 418 aaKnown RBP20.15■□□□□ 0.82
COL9A3-204ENST00000463487 PQLC3Q8N755 202 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 OR2AP1Q8NGE2 309 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 GDAP1L1Q96MZ0 367 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 CINPQ9BW66 212 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-204ENST00000463487 TNKS2Q9H2K2 1166 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 KCNF1Q9H3M0 494 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 MTG2Q9H4K7 406 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 PDFQ9HBH1 243 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 EFR3BQ9Y2G0 817 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 MFHAS1Q9Y4C4 1052 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 R4GN57 208 aa20.15■□□□□ 0.82
COL9A3-204ENST00000463487 NUP205Q92621 2012 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 GOLGA6L9A6NEM1 432 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 J3KR12 359 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 PPP1R12AO14974 1030 aaPredicted RBP20.14■□□□□ 0.81
COL9A3-204ENST00000463487 MAP3K13O43283 966 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 NEBLO76041 1014 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 VAV1P15498 845 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 C5AR1P21730 350 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 TGM2P21980 687 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 P2RY2P41231 377 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 GARSP41250 739 aaKnown RBP20.14■□□□□ 0.81
COL9A3-204ENST00000463487 MARCKSL1P49006 195 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 NR2C2P49116 596 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 RENBPP51606 427 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 RPS14P62263 151 aaKnown RBP20.14■□□□□ 0.81
COL9A3-204ENST00000463487 DYNLT1P63172 113 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 ZNF235Q14590 738 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 ELF2Q15723 593 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 TAZQ16635 292 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 CCDC181Q5TID7 509 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 KAZNQ674X7 775 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 KBTBD6Q86V97 674 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 CACUL1Q86Y37 369 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 RYBPQ8N488 228 aaPredicted RBP20.14■□□□□ 0.81
COL9A3-204ENST00000463487 OR2A12Q8NGT7 310 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 GANCQ8TET4 914 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 PPP1R16AQ96I34 528 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 LRIG1Q96JA1 1093 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 TM6SF2Q9BZW4 377 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 BRD8Q9H0E9 1235 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 ITM2CQ9NQX7 267 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 DYRK4Q9NR20 520 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 SEPT3Q9UH03 358 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 IL36AQ9UHA7 158 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 HEY1Q9Y5J3 304 aa20.14■□□□□ 0.81
COL9A3-204ENST00000463487 hCG_1818297A0A087WSY0 165 aa20.13■□□□□ 0.81
COL9A3-204ENST00000463487 MAFKO60675 156 aa20.13■□□□□ 0.81
COL9A3-204ENST00000463487 CST8O60676 142 aa20.13■□□□□ 0.81
COL9A3-204ENST00000463487 C7P10643 843 aa20.13■□□□□ 0.81
COL9A3-204ENST00000463487 CHRNA3P32297 505 aa20.13■□□□□ 0.81
COL9A3-204ENST00000463487 HSPA9P38646 679 aaKnown RBP20.13■□□□□ 0.81
COL9A3-204ENST00000463487 NBL1P41271 181 aa20.13■□□□□ 0.81
COL9A3-204ENST00000463487 PSMD8P48556 350 aa20.13■□□□□ 0.81
COL9A3-204ENST00000463487 SIM2Q14190 667 aaPredicted RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms