RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	GJC1	P36383	396 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	FNTB	P49356	437 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	STK19	P49842	368 aa	Predicted RBP	11.32	□□□□□ -0.6
APTX-209	ENST00000460940	ARSE	P51690	589 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	VSNL1	P62760	191 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	CRYM	Q14894	314 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	ZKSCAN8	Q15776	578 aa	Predicted RBP	11.32	□□□□□ -0.6
APTX-209	ENST00000460940	FBXW10	Q5XX13	1052 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	IL31	Q6EBC2	164 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	KIAA1211L	Q6NV74	962 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	METTL3	Q86U44	580 aa	Known RBP	11.32	□□□□□ -0.6
APTX-209	ENST00000460940	CPNE8	Q86YQ8	564 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	SH2D3C	Q8N5H7	860 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	KCTD6	Q8NC69	237 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	MDGA1	Q8NFP4	955 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	ATRIP	Q8WXE1	791 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	ATOH1	Q92858	354 aa	Predicted RBP	11.32	□□□□□ -0.6
APTX-209	ENST00000460940	SGSM3	Q96HU1	749 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	CEP44	Q9C0F1	390 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	LACRT	Q9GZZ8	138 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	NOL6	Q9H6R4	1146 aa	Known RBP	11.32	□□□□□ -0.6
APTX-209	ENST00000460940	DDX56	Q9NY93	547 aa	Known RBP	11.32	□□□□□ -0.6
APTX-209	ENST00000460940	TFR2	Q9UP52	801 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	RAD54B	Q9Y620	910 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	ADGRG1	Q9Y653	693 aa		11.32	□□□□□ -0.6
APTX-209	ENST00000460940	KLHL33	A6NCF5	533 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	RASA4B	C9J798	803 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	CBX4	O00257	560 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	RASA4	O43374	803 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	SNAP91	O60641	907 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	LILRB5	O75023	590 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	ZMPSTE24	O75844	475 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	CCDC175	P0C221	793 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	HLA-E	P13747	358 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	GABRG2	P18507	467 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	FNTA	P49354	379 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	SERPINH1	P50454	418 aa	Known RBP	11.31	□□□□□ -0.6
APTX-209	ENST00000460940	DMWD	Q09019	674 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	BYSL	Q13895	437 aa	Known RBP	11.31	□□□□□ -0.6
APTX-209	ENST00000460940	DPYSL3	Q14195	570 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	WLS	Q5T9L3	541 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	AFMID	Q63HM1	303 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	DAAM2	Q86T65	1068 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	C11orf74	Q86VG3	221 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	OR2T3	Q8NH03	318 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	HMGB4	Q8WW32	186 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	FAF2	Q96CS3	445 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	CALN1	Q9BXU9	219 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	LRRC19	Q9H756	370 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	ALG6	Q9Y672	507 aa		11.31	□□□□□ -0.6
APTX-209	ENST00000460940	CHD5	Q8TDI0	1954 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	ARHGAP42	A6NI28	874 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	TTC34	A8MYJ7	566 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	DCLK1	O15075	740 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	KDELR3	O43731	214 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	ACVRL1	P37023	503 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	NBL1	P41271	181 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	NAP1L1	P55209	391 aa	Known RBP	11.3	□□□□□ -0.6
APTX-209	ENST00000460940	ARF5	P84085	180 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	ZBTB16	Q05516	673 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	ELAVL3	Q14576	367 aa	Known RBP	11.3	□□□□□ -0.6
APTX-209	ENST00000460940	ODF2	Q5BJF6	829 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	ZFYVE27	Q5T4F4	411 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	HEATR6	Q6AI08	1181 aa	Known RBP	11.3	□□□□□ -0.6
APTX-209	ENST00000460940	B4GALNT4	Q76KP1	1039 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	FRS2	Q8WU20	508 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	CASKIN2	Q8WXE0	1202 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	HMCES	Q96FZ2	354 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	RPL10L	Q96L21	214 aa	Known RBP	11.3	□□□□□ -0.6
APTX-209	ENST00000460940	CCDC114	Q96M63	670 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	KLC2	Q9H0B6	622 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	SEMA4A	Q9H3S1	761 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	PRSS16	Q9NQE7	514 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	SLCO3A1	Q9UIG8	710 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	SALL4	Q9UJQ4	1053 aa		11.3	□□□□□ -0.6
APTX-209	ENST00000460940	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
APTX-209	ENST00000460940	LRRD1	A4D1F6	860 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	CTAGE15	A4D2H0	777 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ALOX15B	O15296	676 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	BUB1	O43683	1085 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	KRT86	O43790	486 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	KIF5C	O60282	957 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	RNASEH1	O60930	286 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	SIN3B	O75182	1162 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ZNF217	O75362	1048 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	KRT1	P04264	644 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	CTAGE8	P0CG41	777 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	SRC	P12931	536 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	NDUFV2	P19404	249 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	GLDC	P23378	1020 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	KDELR1	P24390	212 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	IL4R	P24394	825 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	CCT5	P48643	541 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	COPA	P53621	1224 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	SERINC3	Q13530	473 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	DLG2	Q15700	870 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	USP39	Q53GS9	565 aa	Known RBP	11.29	□□□□□ -0.6
APTX-209	ENST00000460940	C9orf64	Q5T6V5	341 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	ZNF662	Q6ZS27	426 aa		11.29	□□□□□ -0.6
APTX-209	ENST00000460940	DSG4	Q86SJ6	1040 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms