RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CARNS1A5YM72 827 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 A6NHS1 94 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SIGLEC16A6NMB1 481 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM114B3SHH9 223 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TCEA3O75764 348 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 THP07101 528 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 CTSHP09668 335 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MMP8P22894 467 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ADORA2BP29275 332 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 THPOP40225 353 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 RAP1GAPP47736 663 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 LHX1P48742 406 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 RAB25P57735 213 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SESN2P58004 480 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 PTP4A2Q12974 167 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 IMPG1Q17R60 797 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TIMM50Q3ZCQ8 353 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MORN1Q5T089 497 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 NIPAL1Q6NVV3 410 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MON1BQ7L1V2 547 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 C8orf59Q8N0T1 100 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 HM13Q8TCT9 377 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 TCF12Q99081 682 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SLC25A23Q9BV35 468 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 FSD1LQ9BXM9 530 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 REXO4Q9GZR2 422 aaKnown RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ACP6Q9NPH0 428 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 MBD2Q9UBB5 411 aa6.29□□□□□ -1.4
VPS13D-202ENST00000460333 CHORDC1Q9UHD1 332 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF646O15015 1829 aaPredicted RBP6.29□□□□□ -1.4
VPS13D-202ENST00000460333 SCN4AP35499 1836 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 DDX3YO15523 660 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SIN3BO75182 1162 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 MICAL2O94851 1124 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CYP3A5P20815 502 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PROZP22891 400 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 TKTP29401 623 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SLC18A1P54219 525 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 MMRN1Q13201 1228 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 TP53BP2Q13625 1128 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 KCNT1Q5JUK3 1230 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CYP4A22Q5TCH4 519 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SATL1Q86VE3 508 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SNX32Q86XE0 403 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ALLCQ8N6M5 410 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 AMER2Q8N7J2 671 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 C1orf127Q8N9H9 656 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 UCMAQ8WVF2 138 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PPP1R36Q96LQ0 422 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 C7orf26Q96N11 449 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 DEFB118Q96PH6 123 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CADM1Q9BY67 442 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 WDR41Q9HAD4 459 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 COMMD8Q9NX08 183 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 DSEQ9UL01 958 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PHF24Q9UPV7 400 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 AP3M1Q9Y2T2 418 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 POLR2AP24928 1970 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 TMEM247A6NEH6 219 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SDR42E2A6NKP2 422 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SNPHO15079 494 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SEPT4O43236 478 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SEC24AO95486 1093 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 STAU1O95793 577 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 HOXB6P17509 224 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 BST2Q10589 180 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CDC16Q13042 620 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 MKRN4PQ13434 485 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PDK2Q15119 407 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 MAPRE1Q15691 268 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 MAPK11Q15759 364 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CCDC85BQ15834 202 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 TYSND1Q2T9J0 566 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FAM98BQ52LJ0 330 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ZC3H12BQ5HYM0 836 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 EFHC2Q5JST6 749 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 LRRC8DQ7L1W4 858 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ADGRF2Q8IZF7 708 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SMYD1Q8NB12 490 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ZNF784Q8NCA9 323 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 C19orf18Q8NEA5 215 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 UBA3Q8TBC4 463 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SPATA7Q9P0W8 599 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FAM237BA0A1B0GVD1 139 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 RGSL1A5PLK6 1076 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 TRIM13O60858 407 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PDGFRBP09619 1106 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ALOX12P18054 663 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 HLA-DPA1P20036 260 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 FLT3LGP49771 235 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 RPL10AP62906 217 aaKnown RBP6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SLC25A3Q00325 362 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 BNIP2Q12982 314 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 CRHR2Q13324 411 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SLC10A6Q3KNW5 377 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 GLRA4Q5JXX5 417 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 GRTP1Q5TC63 336 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 PRR23BQ6ZRT6 265 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 ACOT1Q86TX2 421 aa6.28□□□□□ -1.4
VPS13D-202ENST00000460333 SAPCD2Q86UD0 394 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms