RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 STK26Q9P289 416 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 RIMKLBQ9ULI2 386 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 DRG1Q9Y295 367 aaKnown RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 ZBTB1Q9Y2K1 713 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CGNL1Q0VF96 1302 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 ARHGAP31Q2M1Z3 1444 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 SLC38A8A6NNN8 435 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 POC1B-GALNT4F8VUJ3 575 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 H3BNC9 293 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 H7C1Q1 480 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 PSMD9O00233 223 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 PEX12O00623 359 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 SOCS2O14508 198 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 ADAM10O14672 748 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CTIFO43310 598 aaKnown RBP4.49□□□□□ -1.69
VPS29-202ENST00000447578 GUCY1B2O75343 617 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CSF1P09603 554 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 HSPA1AP0DMV8 641 aaKnown RBP4.49□□□□□ -1.69
VPS29-202ENST00000447578 HSPA1BP0DMV9 641 aaKnown RBP4.49□□□□□ -1.69
VPS29-202ENST00000447578 TMEM225BP0DP42 221 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 STAT1P42224 750 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 EIF4A1P60842 406 aaKnown RBP4.49□□□□□ -1.69
VPS29-202ENST00000447578 RBM6P78332 1123 aaKnown RBP4.49□□□□□ -1.69
VPS29-202ENST00000447578 BFSP2Q13515 415 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CAMK1Q14012 370 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 MEA1Q16626 185 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CCDC96Q2M329 555 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CBWD5Q5RIA9 395 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 FAM69AQ5T7M9 428 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 MFSD4BQ5TF39 518 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 TMTC3Q6ZXV5 915 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CPLX4Q7Z7G2 160 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 GALNT5Q7Z7M9 940 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 GALNT4Q8N4A0 578 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 NGEFQ8N5V2 710 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 KCNG4Q8TDN1 519 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 OVCA2Q8WZ82 227 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 PAAF1Q9BRP4 392 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CIPCQ9C0C6 399 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 GHITMQ9H3K2 345 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 SMYD2Q9NRG4 433 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 ANKEF1Q9NU02 776 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 HAUS2Q9NVX0 235 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 NSMCE4AQ9NXX6 385 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 RAB21Q9UL25 225 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 NEXMIFQ5QGS0 1516 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 ANKRD36BQ8N2N9 1353 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 CACNA1IQ9P0X4 2223 aa4.49□□□□□ -1.69
VPS29-202ENST00000447578 NKTRP30414 1462 aaKnown RBP4.49□□□□□ -1.69
VPS29-202ENST00000447578 GLI2P10070 1586 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 QRICH2Q9H0J4 1663 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 PPLO60437 1756 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3DA0A087WVF3 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3IA0A087WXS9 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3EA0A087X179 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3KA0A087X1G2 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 LOC105369274A0A096LPK9 316 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 LOC102723532A0A0G2JNH3 316 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TCRBV5S1A1TA0A578 114 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3BA6NDS4 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3FA6NER0 549 aaPredicted RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 AGAP5A6NIR3 686 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3LB9A6J9 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 M0QYT0 321 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TSPAN4O14817 238 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 HNRNPRO43390 633 aaKnown RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 VNN1O95497 513 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3HP0C7X1 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 ALOX12P18054 663 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 PRKCHP24723 683 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 HOXD12P35452 270 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 KRT20P35900 424 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 GGT5P36269 586 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 PCP4P48539 62 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 DGKQP52824 942 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TPTEP56180 551 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBL3Q12788 808 aaKnown RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 MTAPQ13126 283 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 EIF4A2Q14240 407 aaKnown RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 SEC23BQ15437 767 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D25Q3MII6 688 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 LIPMQ5VYY2 423 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3GQ6DHY5 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3CQ6IPX1 549 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 SHC4Q6S5L8 630 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 SERPINA13PQ6UXR4 307 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 ATF7IPQ6VMQ6 1270 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 DPY19L3Q6ZPD9 716 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 RAB11FIP4Q86YS3 637 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 ZDHHC17Q8IUH5 632 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 DIS3L2Q8IYB7 885 aaKnown RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D3Q8IZP1 549 aaPredicted RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 OR4N4Q8N0Y3 316 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 CUL5Q93034 780 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 VPS50Q96JG6 964 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 PPP1R10Q96QC0 940 aaKnown RBP4.48□□□□□ -1.69
VPS29-202ENST00000447578 SNX18Q96RF0 628 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 PIGSQ96S52 555 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 FUZQ9BT04 418 aa4.48□□□□□ -1.69
VPS29-202ENST00000447578 TAOK3Q9H2K8 898 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms