RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 NDFIP2Q9NV92 336 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 PCDHGB4Q9UN71 923 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 PCDHGB5Q9Y5G0 923 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 SF3B1O75533 1304 aaKnown RBP eCLIP13.77□□□□□ -0.215e-6■■■■■ 35.9
HERPUD1-204ENST00000439977 H3BNX3 289 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 MATN2O00339 956 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 TIMM44O43615 452 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 MPOP05164 745 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 SLC35E2BP0CK96 405 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 VCLP18206 1134 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 CHRNA4P43681 627 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 THOP1P52888 689 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 MTTPP55157 894 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 MED21Q13503 144 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 CNGA3Q16281 694 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 ARL13BQ3SXY8 428 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 MFSD6LQ8IWD5 586 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 DSELQ8IZU8 1212 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 MS4A4AQ96JQ5 239 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 CYP4F12Q9HCS2 524 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 CLEC11AQ9Y240 323 aa13.77□□□□□ -0.21
HERPUD1-204ENST00000439977 GABRDO14764 452 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 MT-CO1P00395 513 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 FESP07332 822 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 XRCC1P18887 633 aaPredicted RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 RPL14P50914 215 aaKnown RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 PLK1P53350 603 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 PCSK7Q16549 785 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 CCL14Q16627 93 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 IQSEC1Q6DN90 963 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 AAGABQ6PD74 315 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 LIMS2Q7Z4I7 341 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 PTAR1Q7Z6K3 402 aaPredicted RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 TAC4Q86UU9 113 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 NDNQ99608 321 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 EPAS1Q99814 870 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 IL22Q9GZX6 179 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 CHST12Q9NRB3 414 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 FLRT1Q9NZU1 646 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 ADAM28Q9UKQ2 775 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 MBLAC1A4D2B0 266 aaPredicted RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 HDAC3O15379 428 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 MSI1O43347 362 aaKnown RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 GRID2O43424 1007 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 MOCS2O96007 188 aaPredicted RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 MYL4P12829 197 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 GLDCP23378 1020 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 PGFP49763 221 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 CDH17Q12864 832 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 SEPT6Q14141 434 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 GSTA3Q16772 222 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 ANO4Q32M45 955 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 FBXL19Q6PCT2 694 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 CENPLQ8N0S6 344 aaPredicted RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 ZSCAN18Q8TBC5 510 aaPredicted RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 SREK1Q8WXA9 508 aaKnown RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 TMA16Q96EY4 203 aaKnown RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 TSNARE1Q96NA8 513 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 NR1H4Q96RI1 486 aaPredicted RBP13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 NPAS2Q99743 824 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 SFMBT1Q9UHJ3 866 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 CPA4Q9UI42 421 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 PLXNA1Q9UIW2 1896 aa13.76□□□□□ -0.21
HERPUD1-204ENST00000439977 C9IYK1 514 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 DLX3O60479 287 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 PGM3O95394 542 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 SCNN1GP51170 649 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 GJA9P57773 515 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 MS4A2Q01362 244 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 BTKQ06187 659 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 GALNT2Q10471 571 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 XKR4Q5GH76 650 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 KBTBD6Q86V97 674 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 HDAC11Q96DB2 347 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 TMEM209Q96SK2 561 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 FICDQ9BVA6 458 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 C1QTNF1Q9BXJ1 281 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 DNAI2Q9GZS0 605 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 FAM96AQ9H5X1 160 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 DNAJB4Q9UDY4 337 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 LAMA3Q16787 3333 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 HOXD8P13378 290 aaPredicted RBP13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 PSEN2P49810 448 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 GRB14Q14449 540 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 LDLRAD1Q5T700 205 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 LIPMQ5VYY2 423 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 ITPRIPL1Q6GPH6 555 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 PLEKHH3Q7Z736 793 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 ISL2Q96A47 359 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 PPP1R10Q96QC0 940 aaKnown RBP13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 PDP2Q9P2J9 529 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 TLL2Q9Y6L7 1015 aa13.75□□□□□ -0.21
HERPUD1-204ENST00000439977 MYOCOSA0A1B0GUC4 107 aa13.74□□□□□ -0.21
HERPUD1-204ENST00000439977 TTC24A2A3L6 582 aaPredicted RBP13.74□□□□□ -0.21
HERPUD1-204ENST00000439977 CCL22O00626 93 aa13.74□□□□□ -0.21
HERPUD1-204ENST00000439977 AHCYL1O43865 530 aa13.74□□□□□ -0.21
HERPUD1-204ENST00000439977 PGK1P00558 417 aa13.74□□□□□ -0.21
HERPUD1-204ENST00000439977 POMCP01189 267 aa13.74□□□□□ -0.21
HERPUD1-204ENST00000439977 MYCNP04198 464 aaPredicted RBP13.74□□□□□ -0.21
HERPUD1-204ENST00000439977 TSPAN8P19075 237 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms