RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 RGS2P41220 211 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 ME1P48163 572 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 TBL3Q12788 808 aaKnown RBP3.79□□□□□ -1.8
VPS41-207ENST00000439468 MAPRE1Q15691 268 aaKnown RBP3.79□□□□□ -1.8
VPS41-207ENST00000439468 CCDC30Q5VVM6 783 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 HAUS3Q68CZ6 603 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 FAAH2Q6GMR7 532 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 GJB7Q6PEY0 223 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 KLBQ86Z14 1044 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 CNTROBQ8N137 903 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 ZNF548Q8NEK5 533 aaPredicted RBP3.79□□□□□ -1.8
VPS41-207ENST00000439468 RFWD2Q8NHY2 731 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 WIPF2Q8TF74 440 aaPredicted RBP3.79□□□□□ -1.8
VPS41-207ENST00000439468 NSMCE1Q8WV22 266 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 ZFPM2Q8WW38 1151 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 RFFLQ8WZ73 363 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 NCSTNQ92542 709 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 KAT2BQ92831 832 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 CD180Q99467 661 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 PIMREGQ9BSJ6 248 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 CADM1Q9BY67 442 aaKnown RBP3.79□□□□□ -1.8
VPS41-207ENST00000439468 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.79□□□□□ -1.8
VPS41-207ENST00000439468 INTS2Q9H0H0 1204 aaKnown RBP3.79□□□□□ -1.8
VPS41-207ENST00000439468 EPHX3Q9H6B9 360 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 MAP3K20Q9NYL2 800 aaKnown RBP3.79□□□□□ -1.8
VPS41-207ENST00000439468 UTS2RQ9UKP6 389 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 SUFUQ9UMX1 484 aa3.79□□□□□ -1.8
VPS41-207ENST00000439468 A0A1W2PPC1 479 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 MSI1O43347 362 aaKnown RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 CCNT1O60563 726 aaKnown RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 TLR2O60603 784 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 NEURL1O76050 574 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 RTN3O95197 1032 aaPredicted RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 SGPL1O95470 568 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 F9P00740 461 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 CAPN3P20807 821 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 GJC1P36383 396 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 PAFAH1B1P43034 410 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 HARS2P49590 506 aaKnown RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 OAZ1P54368 228 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 GOLGA8FQ08AF8 430 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 CAMK1Q14012 370 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 GALNT3Q14435 633 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 KRT32Q14532 448 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 PRICKLE4Q2TBC4 344 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 SLC9B1Q4ZJI4 515 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 FAM171A1Q5VUB5 890 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 COLCA1Q6ZS62 124 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 MOB3CQ70IA8 216 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 TRIM74Q86UV6 250 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 TRIM73Q86UV7 250 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 PIM3Q86V86 326 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 ARFGAP1Q8N6T3 406 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 RAB40AQ8WXH6 277 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 CNOT9Q92600 299 aaKnown RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 HDAC2Q92769 488 aaKnown RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 EME1Q96AY2 570 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 KIF1BPQ96EK5 621 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 TRMOQ9BU70 441 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 NPLQ9BXD5 320 aaPredicted RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 ZHX3Q9H4I2 956 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 TMEM45AQ9NWC5 275 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 CTNNAL1Q9UBT7 734 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 SLC25A10Q9UBX3 287 aaPredicted RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 PLEKHB1Q9UF11 243 aaPredicted RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 IPO11Q9UI26 975 aaKnown RBP3.78□□□□□ -1.8
VPS41-207ENST00000439468 SLC8A2Q9UPR5 921 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 HS3ST3B1Q9Y662 390 aa3.78□□□□□ -1.8
VPS41-207ENST00000439468 LY6G6EA0A0G2JKS1 128 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 CCDC196A0A1B0GTZ2 297 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 PABPN1LA6NDY0 278 aaKnown RBP3.77□□□□□ -1.81
VPS41-207ENST00000439468 PRSS47A8MTI9 375 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 KRTAP29-1A8MX34 341 aaPredicted RBP3.77□□□□□ -1.81
VPS41-207ENST00000439468 TEX22C9J3V5 150 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 INSIG1O15503 277 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 STRNO43815 780 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 CEP104O60308 925 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 ADAP00813 363 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 PSG1P11464 419 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 EDN2P20800 178 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 CIITAP33076 1130 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 RXRGP48443 463 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 CYP2J2P51589 502 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 CCR9P51686 369 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 SLC12A2P55011 1212 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 UFM1P61960 85 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 ZNF766Q5HY98 468 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 DEF8Q6ZN54 512 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 B4GALNT4Q76KP1 1039 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 CCDC25Q86WR0 208 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 GHDCQ8N2G8 530 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 FAM47BQ8NA70 645 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 ANKRD52Q8NB46 1076 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 CMASQ8NFW8 434 aaPredicted RBP3.77□□□□□ -1.81
VPS41-207ENST00000439468 TDRD7Q8NHU6 1098 aaKnown RBP3.77□□□□□ -1.81
VPS41-207ENST00000439468 HSPH1Q92598 858 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 UNC45AQ9H3U1 944 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 HIPK3Q9H422 1215 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 EBF3Q9H4W6 596 aa3.77□□□□□ -1.81
VPS41-207ENST00000439468 OLA1Q9NTK5 396 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms