RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 UBA2Q9UBT2 640 aaPredicted RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 MBD1Q9UIS9 605 aaPredicted RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 CAPN6Q9Y6Q1 641 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 SHROOM3Q8TF72 1996 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 CXorf51AA0A1B0GTR3 108 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 PROB1E7EW31 1015 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 PRAMEF11O60813 436 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 RNASEH1O60930 286 aaKnown RBP12.71□□□□□ -0.37
SKA1-203ENST00000417656 ZNF217O75362 1048 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 ZNF821O75541 412 aaPredicted RBP12.71□□□□□ -0.37
SKA1-203ENST00000417656 MAP3K6O95382 1288 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 DNTTP04053 509 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 PTMAP06454 111 aaKnown RBP12.71□□□□□ -0.37
SKA1-203ENST00000417656 CCDC175P0C221 793 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 ACADMP11310 421 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 DNA2P51530 1060 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 TPMTP51580 245 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 METAP1P53582 386 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 SLC20A2Q08357 652 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 CST6Q15828 149 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 TTC31Q49AM3 519 aaPredicted RBP12.71□□□□□ -0.37
SKA1-203ENST00000417656 ODF2Q5BJF6 829 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 FAM124AQ86V42 546 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 ATPAF2Q8N5M1 289 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 SUMF1Q8NBK3 374 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 CHST14Q8NCH0 376 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 OR2A12Q8NGT7 310 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 GRIN3AQ8TCU5 1115 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 PDLIM2Q96JY6 352 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 CCDC114Q96M63 670 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 RNF157Q96PX1 679 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 FAM129BQ96TA1 746 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 TSGA10Q9BZW7 698 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 PABPC3Q9H361 631 aaKnown RBP12.71□□□□□ -0.37
SKA1-203ENST00000417656 SPAG17Q6Q759 2223 aa12.71□□□□□ -0.37
SKA1-203ENST00000417656 TNRC6BQ9UPQ9 1833 aaKnown RBP12.71□□□□□ -0.38
SKA1-203ENST00000417656 VPS13AQ96RL7 3174 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 PRR23AA6NEV1 266 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 ZNF487B1APH4 448 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 ALOX15BO15296 676 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 MID1O15344 667 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 PALMO75781 387 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 FTCDO95954 541 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 IL1BP01584 269 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 CTSLP07711 333 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 PYGBP11216 843 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 CTNNA1P35221 906 aaKnown RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 PLA2G5P39877 138 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 RECQLP46063 649 aaPredicted RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 CCNHP51946 323 aaPredicted RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 GBE1Q04446 702 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 BYSLQ13895 437 aaKnown RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 PAFAH1B3Q15102 231 aaKnown RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 IFI16Q16666 785 aaKnown RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 POM121L1PQ3SYA9 428 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 PLK5Q496M5 336 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 ATXN7L2Q5T6C5 722 aaPredicted RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 MFSD7Q6UXD7 560 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 DPY19L3Q6ZPD9 716 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 DSG4Q86SJ6 1040 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 METTL3Q86U44 580 aaKnown RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 VSIG1Q86XK7 387 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 RFX6Q8HWS3 928 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 KATNAL2Q8IYT4 538 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 RYBPQ8N488 228 aaPredicted RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 OR6K2Q8NGY2 324 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 KIAA1524Q8TCG1 905 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 EXOC2Q96KP1 924 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 KCNF1Q9H3M0 494 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 SEMA4AQ9H3S1 761 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 LHX3Q9UBR4 397 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 SERGEFQ9UGK8 458 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 IPO11Q9UI26 975 aaKnown RBP12.7□□□□□ -0.38
SKA1-203ENST00000417656 SARDHQ9UL12 918 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 RAB23Q9ULC3 237 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 GUCA1BQ9UMX6 200 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 THADAQ6YHU6 1953 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 CEP192Q8TEP8 1941 aa12.7□□□□□ -0.38
SKA1-203ENST00000417656 A0A1W2PP55 124 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 C1QTNF3-AMACRE9PGA6 284 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 RNF103O00237 685 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 PLK4O00444 970 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 MCF2LO15068 1137 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 KRT86O43790 486 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 ADH1BP00325 375 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 GSRP00390 522 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 IGLV3-19P01714 112 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 LMNAP02545 664 aaKnown RBP12.69□□□□□ -0.38
SKA1-203ENST00000417656 CTNNA2P26232 953 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 CD6P30203 668 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 CHRNA3P32297 505 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 SLC8A1P32418 973 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 CDKN2BP42772 138 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 RHOAP61586 193 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 DYNLT1P63172 113 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 RPL6Q02878 288 aaKnown RBP12.69□□□□□ -0.38
SKA1-203ENST00000417656 ZBTB16Q05516 673 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 IL10RBQ08334 325 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 GALNT2Q10471 571 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms