RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 HDAC11Q96DB2 347 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 OTUD5Q96G74 571 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 HIC2Q96JB3 615 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 AGAP2Q99490 1192 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 RBM38Q9H0Z9 239 aaKnown RBP9.96□□□□□ -0.82
CD44-206ENST00000415148 TLK1Q9UKI8 766 aa9.96□□□□□ -0.82
CD44-206ENST00000415148 TSC2P49815 1807 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 HUS1O60921 280 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 TADA2AO75478 443 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 DDHD2O94830 711 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 JUNP05412 331 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 KCNE1P15382 129 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ERCC2P18074 760 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 TFEBP19484 476 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 PPARGP37231 505 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 HSPA13P48723 471 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ZNF33AQ06730 810 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 MYBPC3Q14896 1274 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 R3HDM1Q15032 1099 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 ZNF423Q2M1K9 1284 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ZNF792Q3KQV3 632 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 LSM12Q3MHD2 195 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 OLFML2BQ68BL8 750 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 BNC2Q6ZN30 1099 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 CATSPER4Q7RTX7 472 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 LINC00523Q86TU6 105 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 KLHDC8BQ8IXV7 354 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 GALNT4Q8N4A0 578 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 TMEM151AQ8N4L1 468 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 CNTD1Q8N815 330 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 B3GALNT2Q8NCR0 500 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 DGCR14Q96DF8 476 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 PGAP3Q96FM1 320 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 VPS39Q96JC1 886 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 C1QTNF1Q9BXJ1 281 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 EIF2AQ9BY44 585 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 ACE2Q9BYF1 805 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 COPS7BQ9H9Q2 264 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 ELP3Q9H9T3 547 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 EFCAB1Q9HAE3 211 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 GALNT8Q9NY28 637 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 RRN3Q9NYV6 651 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 CNOT11Q9UKZ1 510 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 PDCD11Q14690 1871 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 SMIM28A0A1B0GU29 152 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 PDLIM1O00151 329 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ZBTB24O43167 697 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 GRID2O43424 1007 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ATP9BO43861 1147 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 USP12O75317 370 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 GPR32O75388 356 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ZNF286BP0CG31 522 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 HOXD8P13378 290 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 NPR3P17342 541 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 MPSTP25325 297 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 NUDT2P50583 147 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 CCNA1P78396 465 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 PPIL2Q13356 520 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 SLC12A1Q13621 1099 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 PRPSAP1Q14558 356 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 SH2D4BQ5SQS7 431 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 NAPEPLDQ6IQ20 393 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 PTAR1Q7Z6K3 402 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 ZNF467Q7Z7K2 595 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 SNX32Q86XE0 403 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ANKRD13AQ8IZ07 590 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ALDH16A1Q8IZ83 802 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 STYXQ8WUJ0 223 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 NDRG1Q92597 394 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 LRGUKQ96M69 825 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 ZNF512Q96ME7 567 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 KLHL32Q96NJ5 620 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 KIFC1Q9BW19 673 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 SENP6Q9GZR1 1112 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 RHOJQ9H4E5 214 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 LRRC4Q9HBW1 653 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 MRPL40Q9NQ50 206 aaKnown RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 C20orf96Q9NUD7 363 aaPredicted RBP9.95□□□□□ -0.82
CD44-206ENST00000415148 FBXW11Q9UKB1 542 aa9.95□□□□□ -0.82
CD44-206ENST00000415148 CCDC160A6NGH7 325 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 KCNK1O00180 336 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 SPTLC1O15269 473 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 MAGEB3O15480 346 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 RECQL4O94761 1208 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 F9P00740 461 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 EPHA3P29320 983 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 TKTP29401 623 aaKnown RBP9.94□□□□□ -0.82
CD44-206ENST00000415148 RPL5P46777 297 aaKnown RBP9.94□□□□□ -0.82
CD44-206ENST00000415148 GRIA4P48058 902 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 TPI1P60174 286 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 GALNT2Q10471 571 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 CDH17Q12864 832 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 CEACAM7Q14002 265 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 ADGRE1Q14246 886 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 UGP2Q16851 508 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 KIZQ2M2Z5 673 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 ARL13BQ3SXY8 428 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 AMIGO2Q86SJ2 522 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 TICAM1Q8IUC6 712 aa9.94□□□□□ -0.82
CD44-206ENST00000415148 SIX6OS1Q8N1H7 587 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms