RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DOK1Q99704 481 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 ACE2Q9BYF1 805 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 YTHDF1Q9BYJ9 559 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 MUC13Q9H3R2 512 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 WDR41Q9HAD4 459 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 GPATCH2LQ9NWQ4 482 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CHCHD3Q9NX63 227 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CD300AQ9UGN4 299 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 VANGL2Q9ULK5 521 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 GNEQ9Y223 722 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 NME7Q9Y5B8 376 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 NYNRINQ9P2P1 1898 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 A0A087X1B8 175 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 A0A1B0GVG6 124 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 BBIP1A8MTZ0 92 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TSPAN1O60635 241 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TRMUO75648 421 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 PSMC3P17980 439 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 ARF4P18085 180 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 XRCC1P18887 633 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 PTPN3P26045 913 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC26A3P40879 764 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 GALNT2Q10471 571 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 LRP8Q14114 963 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SQLEQ14534 574 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 MGAT5BQ3V5L5 792 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 PPP6R3Q5H9R7 873 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 NBPF12Q5TAG4 269 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 VWA5B1Q5TIE3 1220 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 PPP4R4Q6NUP7 873 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 STRA8Q7Z7C7 330 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 ZC3HC1Q86WB0 502 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 LSMEM2Q8N112 164 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CCDC185Q8N715 623 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 KDM1BQ8NB78 822 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CEP70Q8NHQ1 597 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 ROPN1LQ96C74 230 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SNX27Q96L92 541 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 GPR78Q96P69 363 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 HNRNPABQ99729 332 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 TRMOQ9BU70 441 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SNX25Q9H3E2 840 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 MEAF6Q9HAF1 191 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 PALMDQ9NP74 551 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SETD4Q9NVD3 440 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 CLIC5Q9NZA1 410 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 HACL1Q9UJ83 578 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC8A2Q9UPR5 921 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 NLRC5Q86WI3 1866 aa5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 POLR2AP24928 1970 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-203ENST00000412148 E9PBE3 544 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PIRO00625 290 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SORBS2O94875 1100 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 CD4P01730 458 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 GOT1P17174 413 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PSMB4P28070 264 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 IKBKEQ14164 716 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 KIZQ2M2Z5 673 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SOWAHAQ2M3V2 549 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PPM1JQ5JR12 505 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 NAPEPLDQ6IQ20 393 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 GADL1Q6ZQY3 521 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 KIAA0408Q6ZU52 694 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 BEND5Q7L4P6 421 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SCUBE3Q8IX30 993 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 BBS5Q8N3I7 341 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 LRRC71Q8N4P6 559 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 ZSCAN18Q8TBC5 510 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 TSPEARQ8WU66 669 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 FATE1Q969F0 183 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PGBD4Q96DM1 585 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 WRNIP1Q96S55 665 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 CDRT15Q96T59 188 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 TRIM56Q9BRZ2 755 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 EFHD1Q9BUP0 239 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SPATC1LQ9H0A9 340 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 RNPEPQ9H4A4 650 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 CYP4F11Q9HBI6 524 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 GALNT8Q9NY28 637 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 RSL24D1Q9UHA3 163 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 STAP1Q9ULZ2 295 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PCDHGA7Q9Y5G6 932 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PLXNA3P51805 1871 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 AQP12BA6NM10 295 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 NOP56O00567 594 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SDHDO14521 159 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 KLHL41O60662 606 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 GPR37L1O60883 481 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 ARIH2O95376 493 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 APBA3O96018 575 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 FAM200BP0CF97 657 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC35E2BP0CK96 405 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 ERVK-10P10266 1014 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 IDO1P14902 403 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 WARSP23381 471 aaKnown RBP5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 AXLP30530 894 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC5A2P31639 672 aa5.82□□□□□ -1.48
CCDC88A-203ENST00000412148 CYP2C18P33260 490 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms