RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RNF220Q5VTB9 566 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 ANO7Q6IWH7 933 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 CNSTQ6PJW8 725 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 CEP97Q8IW35 865 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 NDE1Q9NXR1 346 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 DNAJB4Q9UDY4 337 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 ZCWPW2A0A1B0GU75 182 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 B4GALT3O60512 393 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 GSRP00390 522 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 AKR1A1P14550 325 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 VHLP40337 213 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 SERPINB8P50452 374 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 YWHAHQ04917 246 aaPredicted RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 SLC34A1Q06495 639 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 TRIP10Q15642 601 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 KCNA10Q16322 511 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 KYAT3Q6YP21 454 aaKnown RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 MARK2Q7KZI7 788 aaKnown RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 SORT1Q99523 831 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 CPNE1Q99829 537 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 DMAP1Q9NPF5 467 aaPredicted RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 WASHC2DQ5SRD0 308 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 RAP1GAP2Q684P5 730 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 FAM117BQ6P1L5 589 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 PCDH20Q8N6Y1 951 aaKnown RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 DCBLD1Q8N8Z6 715 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 SH3TC2Q8TF17 1288 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 CNGB3Q9NQW8 809 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 SLC38A7Q9NVC3 462 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 OTOFQ9HC10 1997 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 WDR90Q96KV7 1748 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 NCF1BA6NI72 391 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 NCF1CA8MVU1 366 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 MAP3K13O43283 966 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 NCF1P14598 390 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 CPB1P15086 417 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 GNAZP19086 355 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 CCND3P30281 292 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 GLUD2P49448 558 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 PAPOLAP51003 745 aaKnown RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 DSC2Q02487 901 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 TBL3Q12788 808 aaKnown RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 ITPRIPL1Q6GPH6 555 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 TMC7Q7Z402 723 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 FSTL5Q8N475 847 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 MAGEC3Q8TD91 643 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 KATNAL1Q9BW62 490 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 ZCWPW1Q9H0M4 648 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 SOX13Q9UN79 622 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 SSX2IPQ9Y2D8 614 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 HLA-DQB2P05538 268 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 PRSS56P0CW18 603 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 AXLP30530 894 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 CDH17Q12864 832 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 GALNT4Q8N4A0 578 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 TRIB2Q92519 343 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 TEKT5Q96M29 485 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 FAM193BQ96PV7 902 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 TCF7L2Q9NQB0 619 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 GIMAP2Q9UG22 337 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 UBA6A0AVT1 1052 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 TRIM13O60858 407 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 SP100P23497 879 aaPredicted RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 RTP3Q9BQQ7 232 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 GBA3Q9H227 469 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 IPO11Q9UI26 975 aaKnown RBP13.59□□□□□ -0.23
VPS54-203ENST00000409558 ZDHHC2Q9UIJ5 367 aa13.59□□□□□ -0.23
VPS54-203ENST00000409558 C5orf42Q9H799 3197 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 FAM95CA0A1B0GW59 222 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 TRPA1O75762 1119 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 TGDSO95455 350 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 TSHRP16473 764 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 GABRB3P28472 473 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 CCR1P32246 355 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 LIMK2P53671 638 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 POLE2P56282 527 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 TAS2R39P59534 338 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 PTPRRQ15256 657 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 SPANXN3Q5MJ09 141 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 SH2D4BQ5SQS7 431 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 C10orf120Q5SQS8 335 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 PIM3Q86V86 326 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 OR52K2Q8NGK3 314 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 RPRD1AQ96P16 312 aaPredicted RBP13.58□□□□□ -0.23
VPS54-203ENST00000409558 NPAS2Q99743 824 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 ADA2Q9NZK5 511 aa13.58□□□□□ -0.23
VPS54-203ENST00000409558 SERPINA6P08185 405 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 USP46P62068 366 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 CDC42EP1Q00587 391 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 GRTP1Q5TC63 336 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 NAPEPLDQ6IQ20 393 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 ZNF467Q7Z7K2 595 aaPredicted RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 ZNF398Q8TD17 642 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 TBL1YQ9BQ87 522 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 CCDC106Q9BWC9 280 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 SP110Q9HB58 689 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 LNPEPQ9UIQ6 1025 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 RGPD3A6NKT7 1758 aaPredicted RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 RGPD4Q7Z3J3 1758 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 IRF1P10914 325 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms