RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NT5C2P49902 561 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NPY4RP50391 375 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 RRP1P56182 461 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NHLH2Q02577 135 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TMEM115Q12893 351 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ITGA7Q13683 1181 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 MAJINQ3KP22 176 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 C19orf54Q5BKX5 351 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ZNF766Q5HY98 468 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TOR1AIP1Q5JTV8 583 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 MANEALQ5VSG8 457 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ARMC6Q6NXE6 501 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 DENND1BQ6P3S1 775 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 DRICH1Q6PGQ1 229 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 MED25Q71SY5 747 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 RABEPKQ7Z6M1 372 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ADGRG3Q86Y34 549 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PEX5LQ8IYB4 626 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 HDDC3Q8N4P3 179 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 LILRA3Q8N6C8 439 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SYT2Q8N9I0 419 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 IL17RCQ8NAC3 791 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 BEND2Q8NDZ0 799 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FBXO18Q8NFZ0 1043 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ZFP28Q8NHY6 868 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SETD6Q8TBK2 473 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 BRSK1Q8TDC3 778 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ARHGEF2Q92974 986 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FAM227BQ96M60 508 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 COQ10AQ96MF6 247 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PRAM1Q96QH2 718 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NAA11Q9BSU3 229 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 MECRQ9BV79 373 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FAM129AQ9BZQ8 928 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NT5C3AQ9H0P0 336 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 MROH8Q9H579 483 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 RBM28Q9NW13 759 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NINJ2Q9NZG7 142 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 XPR1Q9UBH6 696 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 DKK3Q9UBP4 350 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 EXTL2Q9UBQ6 330 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 HPCAL4Q9UM19 191 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 EXOC7Q9UPT5 735 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PIN4Q9Y237 131 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ACTL7AQ9Y615 435 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 COL4A3Q01955 1670 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ADGRF5Q8IZF2 1346 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FAM237BA0A1B0GVD1 139 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 A0A1W2PQM1 296 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 A0A1W2PRV1 198 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 LRRD1A4D1F6 860 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 C2orf81A6NN90 581 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SLC38A8A6NNN8 435 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CACNB4O00305 520 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 DNM1LO00429 736 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CTDSP2O14595 271 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NOL3O60936 208 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NCR1O76036 304 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 RECQL5O94762 991 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 LARGE1O95461 756 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CER1O95813 267 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 GASTP01350 101 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 OPN1MWP04001 364 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 WEE2P0C1S8 567 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 OPN1MW2P0DN77 364 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 OPN1MW3P0DN78 364 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TYMPP19971 482 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PRKCHP24723 683 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 GPD2P43304 727 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SLC15A1P46059 708 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ALDH1A3P47895 512 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 MRPL12P52815 198 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SCN1BQ07699 218 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SGCGQ13326 291 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PTK6Q13882 451 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SNTB1Q13884 538 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CAPSQ13938 189 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 BOP1Q14137 746 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CLCA4Q14CN2 919 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PABPC1LQ4VXU2 614 aaKnown RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 LRRC24Q50LG9 513 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 NHSL2Q5HYW2 709 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SEM1Q6ZVN7 128 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 KCTD20Q7Z5Y7 419 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ADGRG6Q86SQ4 1221 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PRIMA1Q86XR5 153 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 XYLT1Q86Y38 959 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 FSIP1Q8NA03 581 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TMEM116Q8NCL8 245 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 CTCFLQ8NI51 663 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SLC2A12Q8TD20 617 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TFAP2CQ92754 450 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SAAL1Q96ER3 474 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 DGAT2Q96PD7 388 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 TINAGL1Q9GZM7 467 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SUDS3Q9H7L9 328 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-204ENST00000399489 SCPEP1Q9HB40 452 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 PFDN4Q9NQP4 134 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 ZBTB40Q9NUA8 1239 aa4.29□□□□□ -1.72
HMGB1-204ENST00000399489 LIN7CQ9NUP9 197 aaKnown RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms