RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PGAM1P18669 254 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 ADORA2BP29275 332 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 NR4A2P43354 598 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 SURF1Q15526 300 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 SNX29P2Q8IUI4 249 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF384Q8TF68 577 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 MKL1Q969V6 931 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF518BQ9C0D4 1074 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 NUAK2Q9H093 628 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 DMAC2Q9NW81 257 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 EHD3Q9NZN3 535 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 MTRRQ9UBK8 725 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 ERVK-11Q9UQG0 969 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 A0A1W2PQ72 361 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 TADA2AO75478 443 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FBXO21O94952 628 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 MPOP05164 745 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 SMIM18P0DKX4 95 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 PRDX6P30041 224 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 SFNP31947 248 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FCHO2Q0JRZ9 810 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 KLF1Q13351 362 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 GRM2Q14416 872 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 TTC23Q5W5X9 447 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 DRICH1Q6PGQ1 229 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 SPESP1Q6UW49 350 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 VPS33AQ96AX1 596 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 ZBTB45Q96K62 511 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 POMKQ9H5K3 350 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 GGA3Q9NZ52 723 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CNOT6Q9ULM6 557 aaKnown RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 WBP11Q9Y2W2 641 aaKnown RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 PAPSS1O43252 624 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FAM20BO75063 409 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 ATE1O95260 518 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 UGT2B4P06133 528 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 C2P06681 752 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 ATF4P18848 351 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 MMP8P22894 467 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 SOX6P35712 828 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CDH8P55286 799 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 PMS2P3Q13401 168 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CEACAM7Q14002 265 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 PDK2Q15119 407 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FAM98BQ52LJ0 330 aaKnown RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CCNYL2Q5T2Q4 361 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 MIER2Q8N344 545 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 TCAIMQ8N3R3 496 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 KCTD4Q8WVF5 259 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CERS2Q96G23 380 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FAR2Q96K12 515 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 UNC93B1Q9H1C4 597 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 VANGL2Q9ULK5 521 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 TMEM98Q9Y2Y6 226 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 PCDHB12Q9Y5F1 795 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 NFAT5O94916 1531 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CYP3A7-CYP3A51PA0A087WV96 503 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 A6NL46 340 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 C3orf70A6NLC5 250 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FKBP9O95302 570 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CYP3A7P24462 503 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 RCVRNP35243 200 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 CCT3P49368 545 aaKnown RBP9.43□□□□□ -0.9
COL28A1-201ENST00000399429 HK2P52789 917 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 ELMSAN1Q6PJG2 1045 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FKBP9P1Q75LS8 142 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 KCNMB4Q86W47 210 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FIBCD1Q8N539 461 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 FBXO30Q8TB52 745 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 SLC35B2Q8TB61 432 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 KBTBD7Q8WVZ9 684 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 RIBC2Q9H4K1 309 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 PADI4Q9UM07 663 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 ANKRD12Q6UB98 2062 aa9.43□□□□□ -0.9
COL28A1-201ENST00000399429 KRT87PA6NCN2 255 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 LRCH4O75427 683 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 BCAS2O75934 225 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 BMP10O95393 424 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ITIH1P19827 911 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ADSLP30566 484 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 SLC7A1P30825 629 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 PRKCQQ04759 706 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 DLG2Q15700 870 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TATDN1Q6P1N9 297 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 EEPD1Q7L9B9 569 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 C11orf74Q86VG3 221 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 IPMKQ8NFU5 416 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TRUB1Q8WWH5 349 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 HTR3CQ8WXA8 447 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 PHF21AQ96BD5 680 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 MOCOSQ96EN8 888 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 WDR18Q9BV38 432 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 LIMD1Q9UGP4 676 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 POU2F3Q9UKI9 436 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NUDT5Q9UKK9 219 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 DIP2CQ9Y2E4 1556 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 A0A1B0GTW7 788 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 A8MV72 311 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 H3BMQ9 156 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TK2O00142 265 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms