RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CBARPQ8N350 705 aaPredicted RBP5.08□□□□□ -1.6
USP48-202ENST00000374730 RASGEF1CQ8N431 466 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 SLC44A3Q8N4M1 653 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 USP38Q8NB14 1042 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 C1orf162Q8NEQ5 155 aaPredicted RBP5.08□□□□□ -1.6
USP48-202ENST00000374730 LMO3Q8TAP4 145 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 LNX1Q8TBB1 728 aaPredicted RBP5.08□□□□□ -1.6
USP48-202ENST00000374730 AFAP1L1Q8TED9 768 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 SCFD2Q8WU76 684 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 HDAC7Q8WUI4 952 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 RFFLQ8WZ73 363 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 TAF4BQ92750 862 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 C12orf42Q96LP6 360 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 ACCSQ96QU6 501 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 SH3GL2Q99962 352 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 SENP7Q9BQF6 1050 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 ASPSCR1Q9BZE9 553 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 GPR88Q9GZN0 384 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 TAOK3Q9H2K8 898 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 EHD2Q9NZN4 543 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 VPS18Q9P253 973 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 SUCLA2Q9P2R7 463 aaPredicted RBP5.08□□□□□ -1.6
USP48-202ENST00000374730 DNAJC12Q9UKB3 198 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 TTC7AQ9ULT0 858 aaPredicted RBP5.08□□□□□ -1.6
USP48-202ENST00000374730 INSL6Q9Y581 213 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 ZHX2Q9Y6X8 837 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 SSC5DA1L4H1 1573 aa5.08□□□□□ -1.6
USP48-202ENST00000374730 OTOFQ9HC10 1997 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CCDC78A2IDD5 438 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 AGPSO00116 658 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 DDX39AO00148 427 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 PGRMC1O00264 195 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 SGTAO43765 313 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 DKC1O60832 514 aaKnown RBP eCLIP5.07□□□□□ -1.6
USP48-202ENST00000374730 ZBED4O75132 1171 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 ERN1O75460 977 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 MTA2O94776 668 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 HAUS5O94927 633 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 HEXIM1O94992 359 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 SCGB1D2O95969 90 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 IVLP07476 585 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 TRIM49P0CI25 452 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 TRIM49CP0CI26 452 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 YWHABP31946 246 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 ABCD1P33897 745 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 ACTN2P35609 894 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 MATR3P43243 847 aaKnown RBP eCLIP5.07□□□□□ -1.61e-8■■■□□ 17.7
USP48-202ENST00000374730 LMAN1P49257 510 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 MXI1P50539 228 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 VAMP7P51809 220 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 SLC16A1P53985 500 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 GALCP54803 685 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 PSMC5P62195 406 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CDC42EP1Q00587 391 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CREMQ03060 361 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 PPATQ06203 517 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CETN1Q12798 172 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 SPP2Q13103 211 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CUL1Q13616 776 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 PGM5Q15124 567 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CLUL1Q15846 466 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 C1orf220Q5T0J3 134 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 GJB7Q6PEY0 223 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 Q6ZNX1 250 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 PEX26Q7Z412 305 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 NT5DC3Q86UY8 548 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 WDR75Q8IWA0 830 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 RHOT1Q8IXI2 618 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 COLGALT2Q8IYK4 626 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 MYO1HQ8N1T3 1032 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 METTL13Q8N6R0 699 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 XXYLT1Q8NBI6 393 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 C1orf131Q8NDD1 294 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 U2AF1L4Q8WU68 220 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 CTNNBL1Q8WYA6 563 aaPredicted RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 VOPP1Q96AW1 172 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 NACC2Q96BF6 587 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 HES6Q96HZ4 224 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 MS4A14Q96JA4 679 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 PKNOX2Q96KN3 472 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 Q96MF0 132 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CCDC43Q96MW1 224 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 PSMB7Q99436 277 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CDH19Q9H159 772 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 CARD9Q9H257 536 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 PRDM13Q9H4Q3 707 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 GSTO2Q9H4Y5 243 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 FAM204AQ9H8W3 233 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 UNKLQ9H9P5 680 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 C17orf75Q9HAS0 396 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 AS3MTQ9HBK9 375 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 RAVER2Q9HCJ3 691 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 POLD4Q9HCU8 107 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 ALG13Q9NP73 1137 aaKnown RBP5.07□□□□□ -1.6
USP48-202ENST00000374730 PXMP2Q9NR77 195 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 SMARCAL1Q9NZC9 954 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 PTGFRNQ9P2B2 879 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 TUBD1Q9UJT1 453 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 ZNF112Q9UJU3 913 aa5.07□□□□□ -1.6
USP48-202ENST00000374730 AMFRQ9UKV5 643 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms