RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NPWQ8N729 165 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 CCNYL1Q8N7R7 359 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 RNF169Q8NCN4 708 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 GPR22Q99680 433 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 APBA2Q99767 749 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 XPR1Q9UBH6 696 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 GINS2Q9Y248 185 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 SCN4AP35499 1836 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 KCNU1A8MYU2 1149 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 SLC22A2O15244 555 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 TADA2AO75478 443 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 DAB1O75553 588 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 CNMDO75829 334 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 CABYRO75952 493 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 APOA4P06727 396 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 SLC35E2BP0CK96 405 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 ERCC2P18074 760 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 NFKB1P19838 968 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 CYP2B6P20813 491 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 ACADSBP45954 432 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 RPL34P49207 117 aaKnown RBP16.64■□□□□ 0.25
SDC4-201ENST00000372733 MGAT5BQ3V5L5 792 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 KCTD11Q693B1 232 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 ZC3HC1Q86WB0 502 aaKnown RBP16.64■□□□□ 0.25
SDC4-201ENST00000372733 SPNS2Q8IVW8 549 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 CENPLQ8N0S6 344 aaPredicted RBP16.64■□□□□ 0.25
SDC4-201ENST00000372733 FSTL5Q8N475 847 aaPredicted RBP16.64■□□□□ 0.25
SDC4-201ENST00000372733 EME1Q96AY2 570 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 SNX27Q96L92 541 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 ZNF512Q96ME7 567 aaPredicted RBP16.64■□□□□ 0.25
SDC4-201ENST00000372733 TSNARE1Q96NA8 513 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 ANLNQ9NQW6 1124 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 RUVBL2Q9Y230 463 aaKnown RBP16.64■□□□□ 0.25
SDC4-201ENST00000372733 RNF11Q9Y3C5 154 aa16.64■□□□□ 0.25
SDC4-201ENST00000372733 C7orf72A4D263 438 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 SPTLC1O15269 473 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 DLX3O60479 287 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 ZNF26P17031 533 aaPredicted RBP16.63■□□□□ 0.25
SDC4-201ENST00000372733 PSMC3P17980 439 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 NDUFV1P49821 464 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 NR1H2P55055 460 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 DGKDQ16760 1214 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 HFE2Q6ZVN8 426 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 CHERPQ8IWX8 916 aaKnown RBP16.63■□□□□ 0.25
SDC4-201ENST00000372733 RDH11Q8TC12 318 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 STYXQ8WUJ0 223 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 MPHOSPH6Q99547 160 aaKnown RBP16.63■□□□□ 0.25
SDC4-201ENST00000372733 EIF2AQ9BY44 585 aaKnown RBP16.63■□□□□ 0.25
SDC4-201ENST00000372733 PCDHAC1Q9H158 963 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 GBA3Q9H227 469 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 TXNRD2Q9NNW7 524 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 FIS1Q9Y3D6 152 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 PCNTO95613 3336 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 TRIM38O00635 465 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 CAPNS1P04632 268 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 GNL1P36915 607 aaPredicted RBP16.63■□□□□ 0.25
SDC4-201ENST00000372733 CSRP3P50461 194 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 EN1Q05925 392 aaPredicted RBP16.63■□□□□ 0.25
SDC4-201ENST00000372733 C9orf57Q5W0N0 161 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 LRRC8EQ6NSJ5 796 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 LRRC52Q8N7C0 313 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 CEP70Q8NHQ1 597 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 NPY6RQ99463 290 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 OMDQ99983 421 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 RHBDL2Q9NX52 303 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 VTI1BQ9UEU0 232 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 CEPT1Q9Y6K0 416 aa16.63■□□□□ 0.25
SDC4-201ENST00000372733 TNS1Q9HBL0 1735 aaKnown RBP16.62■□□□□ 0.25
SDC4-201ENST00000372733 BPTFQ12830 3046 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 ARHGAP10A1A4S6 786 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 I6L893 689 aaPredicted RBP16.62■□□□□ 0.25
SDC4-201ENST00000372733 CLDN5O00501 218 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 DDHD2O94830 711 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 CDH2P19022 906 aaPredicted RBP16.62■□□□□ 0.25
SDC4-201ENST00000372733 RALGDSQ12967 914 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 FRG1Q14331 258 aaKnown RBP16.62■□□□□ 0.25
SDC4-201ENST00000372733 RFTN1Q14699 578 aaPredicted RBP16.62■□□□□ 0.25
SDC4-201ENST00000372733 CNTD1Q8N815 330 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 BEST2Q8NFU1 509 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 DDI1Q8WTU0 396 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 SGF29Q96ES7 293 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 HSFY1Q96LI6 401 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 COQ10BQ9H8M1 238 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 PIM2Q9P1W9 311 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 ANKRD6Q9Y2G4 727 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 BTBD19C9JJ37 291 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 GABRB3P28472 473 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 RABGGTBP53611 331 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 CREB5Q02930 508 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 TMEM62Q0P6H9 643 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 SH2D4BQ5SQS7 431 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 TSTD2Q5T7W7 516 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 KDM1BQ8NB78 822 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 LRTOMTQ8WZ04 291 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 SNX25Q9H3E2 840 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 RHOJQ9H4E5 214 aa16.62■□□□□ 0.25
SDC4-201ENST00000372733 A0A0J9YVX5 310 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 C9IYK1 514 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 SDHDO14521 159 aa16.61■□□□□ 0.25
SDC4-201ENST00000372733 BEST1O76090 585 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms