RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 CASP12Q6UXS9 341 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 SYTL1Q8IYJ3 562 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ITFG1Q8TB96 612 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 FIG4Q92562 907 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 PTCD3Q96EY7 689 aaKnown RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ST6GALNAC4Q9H4F1 302 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 TAS2R14Q9NYV8 317 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 RAP2CQ9Y3L5 183 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 TIMM13Q9Y5L4 95 aaPredicted RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 CACNA1FO60840 1977 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 A0A088AWK7 358 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 KPNA4O00629 521 aaPredicted RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 SLC9A3R1O14745 358 aaPredicted RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 HDAC3O15379 428 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 PHGDHO43175 533 aaKnown RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 PROCP04070 461 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ZNF10P21506 573 aaPredicted RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 GUCA1AP43080 201 aaPredicted RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ATP6V0D1P61421 351 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 BNIP2Q12982 314 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 NPY5RQ15761 445 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 STXBP5Q5T5C0 1151 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 DPP10Q8N608 796 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 BHMTQ93088 406 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 MRPS26Q9BYN8 205 aaKnown RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 CNGB3Q9NQW8 809 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 DUSP12Q9UNI6 340 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 TSC22D4Q9Y3Q8 395 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 TBKBP1A7MCY6 615 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 CBX6O95503 412 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 STAU1O95793 577 aaKnown RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 GJB1P08034 283 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ANXA5P08758 320 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 CLTBP09497 229 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 POU1F1P28069 291 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 MLH1P40692 756 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 GRM5P41594 1212 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 USP39Q53GS9 565 aaKnown RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 AAGABQ6PD74 315 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 SPPL2AQ8TCT8 520 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 HASPINQ8TF76 798 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 PPP3R2Q96LZ3 170 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 C1QTNF7Q9BXJ2 289 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 SH3BP4Q9P0V3 963 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 LIMD1Q9UGP4 676 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 PRPF19Q9UMS4 504 aaKnown RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 KCPQ6ZWJ8 1503 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 RGSL1A5PLK6 1076 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 FAM20BO75063 409 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 HPGDP15428 266 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 PCSK2P16519 638 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 GNA13Q14344 377 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 BRMS1LQ5PSV4 323 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 PLEKHA7Q6IQ23 1121 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 AFTPHQ6ULP2 937 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 FAM183BPQ6ZVS7 135 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 NECAB2Q7Z6G3 386 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 FAM228AQ86W67 206 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 SLC44A2Q8IWA5 706 aaPredicted RBP11.9□□□□□ -0.51
COL9A1-202ENST00000357250 TOP6BLQ8N6T0 577 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 SERAC1Q96JX3 654 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 TMEM237Q96Q45 408 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 TINF2Q9BSI4 451 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 NLNQ9BYT8 704 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 LRMDAQ9H2I8 198 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 RRAGCQ9HB90 399 aa11.9□□□□□ -0.51
COL9A1-202ENST00000357250 LEF1Q9UJU2 399 aaPredicted RBP11.9□□□□□ -0.51
COL9A1-202ENST00000357250 CCDC130P13994 396 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CXCR2P25025 360 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 PSMB4P28070 264 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 ADCYAP1R1P41586 468 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 GABRB2P47870 512 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CAPSQ13938 189 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 TSNQ15631 228 aaKnown RBP11.89□□□□□ -0.51
COL9A1-202ENST00000357250 UGCGQ16739 394 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 DGUOKQ16854 277 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CHMP1BQ7LBR1 199 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 STK32CQ86UX6 486 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CROCCP3Q8IVE0 287 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 HELQQ8TDG4 1101 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 FNIP1Q8TF40 1166 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 SEPHS2Q99611 448 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CEP41Q9BYV8 373 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 SLC39A8Q9C0K1 460 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CCDC167Q9P0B6 97 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 SAE1Q9UBE0 346 aaPredicted RBP11.89□□□□□ -0.51
COL9A1-202ENST00000357250 SNX6Q9UNH7 406 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CORO2BQ9UQ03 480 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 MTF2Q9Y483 593 aaPredicted RBP11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CENPXA8MT69 81 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 PEX1O43933 1283 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 EPN2O95208 641 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 LCA5LO95447 670 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 SERPINA6P08185 405 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 GSTM1P09488 218 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 CNPP09543 421 aaKnown RBP11.89□□□□□ -0.51
COL9A1-202ENST00000357250 USP17L7P0C7H9 530 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 BDNFP23560 247 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 LRPAP1P30533 357 aa11.89□□□□□ -0.51
COL9A1-202ENST00000357250 GRK4P32298 578 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms