RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FESP07332 822 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PSME3P61289 254 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 NEPROQ6NW34 567 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 UNC5BQ8IZJ1 945 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PCSK9Q8NBP7 692 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 USP33Q8TEY7 942 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 RBM22Q9NW64 420 aaKnown RBP eCLIP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 POLIQ9UNA4 740 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 REXO2Q9Y3B8 237 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 KIF13BQ9NQT8 1826 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 GNG14A0A1W2PPG7 69 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 MYL12BO14950 172 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ACO1P21399 889 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PTX3P26022 381 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PRR23CQ6ZRP0 262 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 CDHR5Q9HBB8 845 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 GSC2O15499 205 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ZNF284Q2VY69 593 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 STXBP5Q5T5C0 1151 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ARHGAP17Q68EM7 881 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 RETSATQ6NUM9 610 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 GPSM1Q86YR5 675 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PGAM4Q8N0Y7 254 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 DNAJB8Q8NHS0 232 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 RNF145Q96MT1 663 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 ARMCX1Q9P291 453 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 UXTQ9UBK9 157 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 C5P01031 1676 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 MYO5AQ9Y4I1 1855 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 CDC42P60953 191 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 MRPS22P82650 360 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 TMEM132BQ14DG7 1078 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 DNAJB7Q7Z6W7 309 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 LNX1Q8TBB1 728 aaPredicted RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 PAIP1Q9H074 479 aaKnown RBP10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 POMKQ9H5K3 350 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 STOML2Q9UJZ1 356 aa10.42□□□□□ -0.74
CCDC88A-202ENST00000336838 TMEM191CA6NGB0 347 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 POU6F1Q14863 301 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 HERC3Q15034 1050 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 NIPA2Q8N8Q9 360 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SEPT5Q99719 369 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 ARHGAP28Q9P2N2 729 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SH3GLB1Q9Y371 365 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 ACADVLP49748 655 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 AFTPHQ6ULP2 937 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 KDELC2Q7Z4H8 507 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SPATA19Q7Z5L4 167 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 KRT78Q8N1N4 520 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 NT5MQ9NPB1 228 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 AKAP7Q9P0M2 348 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 RAPGEFL1Q9UHV5 662 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 PCDHGC3Q9UN70 934 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 C4AP0C0L4 1744 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 C4BP0C0L5 1744 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 MDM4O15151 490 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 KCNQ2O43526 872 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 TPST1O60507 370 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 LTFP02788 710 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 RPL9P32969 192 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 DLG1Q12959 904 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 IL17AQ16552 155 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 PMF1Q6P1K2 205 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 FAM131BQ86XD5 332 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 CHORDC1Q9UHD1 332 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 GRIN2DO15399 1336 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 MYO9BQ13459 2157 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 MEIS2O14770 477 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SYNCRIPO60506 623 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 PIGNO95427 931 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 CCNB1P14635 433 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 BMPR2Q13873 1038 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 ZDHHC20Q5W0Z9 365 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 ANKS1BQ7Z6G8 1248 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 RNF180Q86T96 592 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 CERKQ8TCT0 537 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SYT15Q9BQS2 421 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 FAM126AQ9BYI3 521 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 RHOBTB2Q9BYZ6 727 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SHCBP1LQ9BZQ2 653 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 C6orf62Q9GZU0 229 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 PTCH2Q9Y6C5 1203 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 B3GAT3O94766 335 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 FGF1P05230 155 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 CXCL8P10145 99 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 FOLH1Q04609 750 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 PPP3CAQ08209 521 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 FAXCQ5TGI0 409 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 R3HCC1LQ7Z5L2 792 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 MRPL9Q9BYD2 267 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 SETD4Q9NVD3 440 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 DYRK3O43781 588 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 MPZL2O60487 215 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 GPIP06744 558 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 BPGMP07738 259 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 CDH3P22223 829 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 S100A1P23297 94 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 GRIA4P48058 902 aa10.41□□□□□ -0.74
CCDC88A-202ENST00000336838 ALDH7A1P49419 539 aaKnown RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms