RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 OR52K1Q8NGK4 314 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 COPS5Q92905 334 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 TRIM63Q969Q1 353 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 UGT2B28Q9BY64 529 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PCDH9Q9HC56 1237 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 UXTQ9UBK9 157 aaPredicted RBP12.78□□□□□ -0.36
SDC3-201ENST00000336798 TRPV2Q9Y5S1 764 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 SCN2BO60939 215 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 SLC25A12O75746 678 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 LRATO95237 230 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 CBX6O95503 412 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PPIL2Q13356 520 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 WSCD1Q658N2 575 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 TTI2Q6NXR4 508 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 SVOPQ8N4V2 548 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 OSCP1Q8WVF1 389 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 PYDC1Q8WXC3 89 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 EHD3Q9NZN3 535 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 OGDHLQ9ULD0 1010 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 SNX6Q9UNH7 406 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 MIPP30301 263 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 IFNGR2P38484 337 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 RMND5BQ96G75 393 aaPredicted RBP12.78□□□□□ -0.36
SDC3-201ENST00000336798 TMPRSS4Q9NRS4 437 aa12.78□□□□□ -0.36
SDC3-201ENST00000336798 KPNA6O60684 536 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 BANF1O75531 89 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 IFI35P80217 286 aaPredicted RBP12.77□□□□□ -0.36
SDC3-201ENST00000336798 SLC6A3Q01959 620 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 IKBKEQ14164 716 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 GALNT3Q14435 633 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 ADRM1Q16186 407 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 CES5AQ6NT32 575 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 GMCL1P1Q8NEA9 526 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 ACTRT2Q8TDY3 377 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 PDCD10Q9BUL8 212 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 DCLRE1BQ9H816 532 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 KCNQ5Q9NR82 932 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 SLC24A2Q9UI40 661 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 GTPBP1O00178 669 aaKnown RBP12.77□□□□□ -0.36
SDC3-201ENST00000336798 NKRFO15226 690 aaKnown RBP eCLIP12.77□□□□□ -0.36
SDC3-201ENST00000336798 RECQL4O94761 1208 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 FARP2O94887 1054 aaPredicted RBP12.77□□□□□ -0.36
SDC3-201ENST00000336798 POLR2LP62875 67 aaKnown RBP12.77□□□□□ -0.36
SDC3-201ENST00000336798 MRPS22P82650 360 aaKnown RBP12.77□□□□□ -0.36
SDC3-201ENST00000336798 NDUFA5Q16718 116 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 TMEM110Q86TL2 294 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 HPS6Q86YV9 775 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 BPIFB6Q8NFQ5 453 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 MAGEE2Q8TD90 523 aaPredicted RBP12.77□□□□□ -0.36
SDC3-201ENST00000336798 PPP1R16AQ96I34 528 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 ZNF354BQ96LW1 612 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 REEP1Q9H902 201 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 ANGPT4Q9Y264 503 aa12.77□□□□□ -0.36
SDC3-201ENST00000336798 GLI2P10070 1586 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 FAM25EA8MYX2 175 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 ISM1B1AKI9 464 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 ANKRD63C9JTQ0 380 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 MED26O95402 600 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 PGK1P00558 417 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 NEK3P51956 506 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 MTTPP55157 894 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 PREPLQ4J6C6 727 aaPredicted RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 RNASE12Q5GAN4 147 aaKnown RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 INTS5Q6P9B9 1019 aaKnown RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 CXCL17Q6UXB2 119 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 SERPINA13PQ6UXR4 307 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 FAM220AQ7Z4H9 259 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TTC7BQ86TV6 843 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TEKT5Q96M29 485 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 ELOVL4Q9GZR5 314 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 POLR1EQ9GZS1 481 aaKnown RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 RXFP1Q9HBX9 757 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TMEM138Q9NPI0 162 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 RABGEF1Q9UJ41 708 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 A0A088AWK7 358 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 ZNF10P21506 573 aaPredicted RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 IRF8Q02556 426 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 RAD51AP1Q96B01 352 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 APOPT1Q96IL0 206 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 POPDC2Q9HBU9 364 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TUBA8Q9NY65 449 aaPredicted RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 NINJ2Q9NZG7 142 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TECPR2O15040 1411 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TNFRSF21O75509 655 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 PROCP04070 461 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TLX1P31314 330 aaPredicted RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 MCL1Q07820 350 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 GCNT7Q6ZNI0 430 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 ZNF655Q8N720 491 aaPredicted RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 SENP8Q96LD8 212 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 PURBQ96QR8 312 aaKnown RBP12.77□□□□□ -0.37
SDC3-201ENST00000336798 TNKS2Q9H2K2 1166 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 ZNF232Q9UNY5 417 aa12.77□□□□□ -0.37
SDC3-201ENST00000336798 TRAV19A0A0A6YYK7 116 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 KHDRBS3O75525 346 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 ERAL1O75616 437 aaKnown RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 PIGNO95427 931 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 GZMAP12544 262 aa12.76□□□□□ -0.37
SDC3-201ENST00000336798 RPA3P35244 121 aaPredicted RBP12.76□□□□□ -0.37
SDC3-201ENST00000336798 SLC26A2P50443 739 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms