RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GJA3Q9Y6H8 435 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 WDR81Q562E7 1941 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 SOBPA7XYQ1 873 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 PHGDHO43175 533 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 CYP3A5P20815 502 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 MATN1P21941 496 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 PTGER2P43116 358 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 DUOXA2Q1HG44 320 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 INSCQ1MX18 579 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 KIZQ2M2Z5 673 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 CCDC153Q494R4 210 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 PERM1Q5SV97 790 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 STRIP1Q5VSL9 837 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 KCTD8Q6ZWB6 473 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 PIGZQ86VD9 579 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 CCNYL1Q8N7R7 359 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 COLGALT1Q8NBJ5 622 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 CHPT1Q8WUD6 406 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 ACDQ96AP0 544 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 TRIM8Q9BZR9 551 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 LHX5Q9H2C1 402 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 PXMP2Q9NR77 195 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 FAM49BQ9NUQ9 324 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 CDH7Q9ULB5 785 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 CDYLQ9Y232 598 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 GCATO75600 419 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 TPSB2P20231 275 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 GP5P40197 560 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 GPD2P43304 727 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 TPSAB1Q15661 275 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 DGKDQ16760 1214 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 IL31Q6EBC2 164 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 SLFN12LQ6IEE8 588 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 BRSK2Q8IWQ3 736 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 TMEM192Q8IY95 271 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 LSMEM2Q8N112 164 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 PYROXD2Q8N2H3 581 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 C12orf29Q8N999 325 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 HMGCLL1Q8TB92 370 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 ATP6V0A1Q93050 837 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 SGF29Q96ES7 293 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 HEXIM2Q96MH2 286 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 MTG1Q9BT17 334 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 TASP1Q9H6P5 420 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 IL1RL2Q9HB29 575 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 FEM1BQ9UK73 627 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 SLC27A5Q9Y2P5 690 aa13.65□□□□□ -0.22
CCDC88C-201ENST00000331194 KRBA1A5PL33 1030 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 RGS20O76081 388 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 C8BP07358 591 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 SBK3P0C264 359 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 YBX1P67809 324 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ENPEPQ07075 957 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ZNF460Q14592 562 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 PDK2Q15119 407 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 HEATR6Q6AI08 1181 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 STYK1Q6J9G0 422 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 EPHX4Q8IUS5 362 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 SCUBE3Q8IX30 993 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 TP53INP2Q8IXH6 220 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 OR9I1Q8NGQ6 314 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 CASP10Q92851 521 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 LRCH3Q96II8 777 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 WNK4Q96J92 1243 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 B3GNT5Q9BYG0 378 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 OXSMQ9NWU1 459 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 RAP2CQ9Y3L5 183 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 GPC6Q9Y625 555 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 NCAM1P13591 858 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 TGM2P21980 687 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ACTR2P61160 394 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 NSUN2Q08J23 767 aaKnown RBP eCLIP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 BAATQ14032 418 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 PPP1R3AQ16821 1122 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 NIPAL1Q6NVV3 410 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 RWDD4Q6NW29 188 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ILDR2Q71H61 639 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 IGFN1Q86VF2 1251 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 SIX6OS1Q8N1H7 587 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 CPSF7Q8N684 471 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 TAMM41Q96BW9 452 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 CERS2Q96G23 380 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 SCYL1Q96KG9 808 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ACE2Q9BYF1 805 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ZFYVE28Q9HCC9 887 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 SLC39A10Q9ULF5 831 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 AP4E1Q9UPM8 1137 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 RIPK3Q9Y572 518 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 CFAP99D6REC4 459 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 PSMB4P28070 264 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 ACADVLP49748 655 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 PTPN11Q06124 597 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 SEMA5AQ13591 1074 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 RGS21Q2M5E4 152 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 MAP1SQ66K74 1059 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 SNRNP48Q6IEG0 339 aaKnown RBP13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 FAM160B2Q86V87 743 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 WDR49Q8IV35 697 aa13.64□□□□□ -0.23
CCDC88C-201ENST00000331194 URGCPQ8TCY9 931 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms