RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DISC1C4P0D8 188 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 BMPR1BO00238 502 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PGRMC2O15173 223 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 MAGEB4O15481 346 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 DYRK3O43781 588 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 SNCGO76070 127 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC34A2O95436 690 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 FGGP02679 453 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ACSL1P33121 698 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PDX1P52945 283 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 BLMHQ13867 455 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 STARD3Q14849 445 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 LDLRAP1Q5SW96 308 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF658Q5TYW1 1059 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC30A6Q6NXT4 461 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PAPD4Q6PIY7 484 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ATCAYQ86WG3 371 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 OOSP2Q86WS3 158 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RASAL3Q86YV0 1011 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 TBC1D21Q8IYX1 336 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 WDSUB1Q8N9V3 476 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF527Q8NB42 609 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC44A5Q8NCS7 719 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 BPIFB6Q8NFQ5 453 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 OR5T2Q8NGG2 359 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 EDC3Q96F86 508 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF560Q96MR9 790 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 TSNAXQ99598 290 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ZC3H12CQ9C0D7 883 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ELAC1Q9H777 363 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 CCNL1Q9UK58 526 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 NPHP3Q7Z494 1330 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF816-ZNF321PA0A0X1KG74 233 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PDE2AO00408 941 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 MPOP05164 745 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RPS17P08708 135 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 CALB2P22676 271 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RIPK1Q13546 671 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RRP1BQ14684 758 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 DPY19L2Q6NUT2 758 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ARHGAP11AQ6P4F7 1023 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PPIL6Q8IXY8 311 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 CPXCR1Q8N123 301 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 AVL9Q8NBF6 648 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 TERB2Q8NHR7 220 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 CDRT15Q96T59 188 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 RIT2Q99578 217 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 FAM173AQ9BQD7 235 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ATG10Q9H0Y0 220 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 HIPK3Q9H422 1215 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ZCCHC17Q9NP64 241 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 ENY2Q9NPA8 101 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 PANK4Q9NVE7 773 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 AASSQ9UDR5 926 aa7.73□□□□□ -1.17
LIMCH1-201ENST00000313860 NCF1BA6NI72 391 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NCF1CA8MVU1 366 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 DNM1LO00429 736 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ADAMTS3O15072 1205 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 FADS1O60427 444 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 OAZ2O95190 189 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NCF1P14598 390 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CHN1P15882 459 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF16P17020 682 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 FMO3P31513 532 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SCNN1BP51168 640 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 GBX2P52951 348 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 AP3S2P59780 193 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 HTD2P86397 168 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ENPEPQ07075 957 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 VAMP3Q15836 100 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 HIST2H2ACQ16777 129 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 TIGD6Q17RP2 521 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 TREX2Q9BQ50 279 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NPLQ9BXD5 320 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 FANCLQ9NW38 375 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 TNNQ9UQP3 1299 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SNAPC4Q5SXM2 1469 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 KDM6BO15054 1643 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 MAGEB6P1A0A0J9YX57 407 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 B4E171 279 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NR5A2O00482 541 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 H2AFXP16104 143 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CDKN2CP42773 168 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CRY2Q49AN0 593 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 PRMT9Q6P2P2 845 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 C7orf57Q8NEG2 295 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ST7LQ8TDW4 575 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 WDR6Q9NNW5 1121 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 OAS3Q9Y6K5 1087 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CDC7O00311 574 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC30A4O14863 429 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NCK2O43639 380 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 RP2O75695 350 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 SCGB1A1P11684 91 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 EPCAMP16422 314 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 CYP2B6P20813 491 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 ERVK-25P63136 954 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 NIPAL4Q0D2K0 466 aa7.72□□□□□ -1.17
LIMCH1-201ENST00000313860 AP5B1Q2VPB7 878 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms