RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 FBXL8Q96CD0 374 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 TSPAN18Q96SJ8 248 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CDRT15Q96T59 188 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 MRPL9Q9BYD2 267 aaKnown RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 BUD23O43709 281 aaKnown RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 PROSCO94903 275 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 EOMESO95936 686 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 RBP3P10745 1247 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 KCNE1P15382 129 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 JAK1P23458 1154 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 KPNA1P52294 538 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 YWHAHQ04917 246 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 MARVELD2Q8N4S9 558 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CAPSLQ8WWF8 208 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 TSNARE1Q96NA8 513 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CALN1Q9BXU9 219 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CNGB3Q9NQW8 809 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 C20orf96Q9NUD7 363 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 K7EPI3 171 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 MGEA5O60502 916 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 DNAJA2O60884 412 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 ZBED1O96006 694 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 ELK3P41970 407 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CDK9P50750 372 aaKnown RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 LLGL2Q6P1M3 1020 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 POLNQ7Z5Q5 900 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 CHSY1Q86X52 802 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 FBXW8Q8N3Y1 598 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.08□□□□□ -0.64
LSM3-201ENST00000306024 ZSCAN18Q8TBC5 510 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 TMEM174Q8WUU8 243 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 NRBF2Q96F24 287 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 PLEKHA8Q96JA3 519 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 SSU72Q9NP77 194 aaKnown RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 TMEM161AQ9NX61 479 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 ABI2Q9NYB9 513 aaPredicted RBP11.08□□□□□ -0.64
LSM3-201ENST00000306024 SQORQ9Y6N5 450 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 NUMBLQ9Y6R0 609 aa11.08□□□□□ -0.64
LSM3-201ENST00000306024 A0A088AWK7 358 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 CYP3A5P20815 502 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 CLDN10P78369 228 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 ZNF423Q2M1K9 1284 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.07□□□□□ -0.64
LSM3-201ENST00000306024 BHLHE22Q8NFJ8 381 aaPredicted RBP11.07□□□□□ -0.64
LSM3-201ENST00000306024 SLC2A14Q8TDB8 520 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 MCEEQ96PE7 176 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 HNRNPABQ99729 332 aaKnown RBP11.07□□□□□ -0.64
LSM3-201ENST00000306024 SEPT3Q9UH03 358 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 SORCS3Q9UPU3 1222 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 A0A087WXM4 84 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 PITPNM1O00562 1244 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 PSTPIP1O43586 416 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 ZNF623O75123 536 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 SIN3BO75182 1162 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 MICAL2O94851 1124 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 GRIK1P39086 918 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 ASPAP45381 313 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 SOX4Q06945 474 aaPredicted RBP11.07□□□□□ -0.64
LSM3-201ENST00000306024 ATP13A4Q4VNC1 1196 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 ZFP1Q6P2D0 407 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 DENND1BQ6P3S1 775 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 ADGRD1Q6QNK2 874 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 DNAJC14Q6Y2X3 702 aaPredicted RBP11.07□□□□□ -0.64
LSM3-201ENST00000306024 SLC26A11Q86WA9 606 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 C7orf61Q8IZ16 206 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 METTL25Q8N6Q8 603 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 GLIS1Q8NBF1 620 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 EXD1Q8NHP7 514 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 ELOVL4Q9GZR5 314 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 XYLT2Q9H1B5 865 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 INIPQ9NRY2 104 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 THAP1Q9NVV9 213 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 ZC3H7BQ9UGR2 993 aaKnown RBP11.07□□□□□ -0.64
LSM3-201ENST00000306024 DSEQ9UL01 958 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A9O60656 530 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 CILPO75339 1184 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 SORBS2O94875 1100 aaKnown RBP11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A6P19224 532 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A1P22309 533 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A4P22310 534 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A3P35503 534 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A5P35504 534 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 CDH15P55291 814 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 RAB15P59190 212 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 CCNIQ14094 377 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 GRM2Q14416 872 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 NEDD8Q15843 81 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 CTXN3Q4LDR2 81 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 METTL21CQ5VZV1 264 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 DCLRE1AQ6PJP8 1040 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 MFSD7Q6UXD7 560 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UTS2BQ765I0 119 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UNC93AQ86WB7 457 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 PIWIL2Q8TC59 973 aaKnown RBP11.07□□□□□ -0.64
LSM3-201ENST00000306024 TMIGD2Q96BF3 282 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A7Q9HAW7 530 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A10Q9HAW8 530 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 UGT1A8Q9HAW9 530 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 PCDH9Q9HC56 1237 aa11.07□□□□□ -0.64
LSM3-201ENST00000306024 SATB2Q9UPW6 733 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms