RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NPHP3-ACAD11A0A0J9YXS1 232 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 FADS2P1A8MWK0 482 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 INO80B-WBP1J3KQ70 363 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ZBTB11O95625 1053 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ENO1P06733 434 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TARSP26639 723 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CDH6P55285 790 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 LRRC70Q7Z2Q7 622 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ARL10Q8N8L6 244 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ASB9Q96DX5 294 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 B3GALT6Q96L58 329 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CCDC3Q9BQI4 270 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 LXNQ9BS40 222 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM106CQ9BVX2 250 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 NT5C1AQ9BXI3 368 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 RTFDC1Q9BY42 306 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ADAMTS10Q9H324 1103 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 AHSPQ9NZD4 102 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ZNHIT2Q9UHR6 403 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 DCTN4Q9UJW0 460 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM5Q9Y2B1 443 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ARIH1Q9Y4X5 557 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 NFASCO94856 1347 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PRR36Q9H6K5 1346 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ZSCAN5CA6NGD5 496 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 NOS3P29474 1203 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PTGER2P43116 358 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 BCAT1P54687 386 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 AQP5P55064 265 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TMC5Q6UXY8 1006 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SPOCD1Q6ZMY3 1216 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 MTDHQ86UE4 582 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SPERTQ8NA61 448 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TRUB1Q8WWH5 349 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CYGBQ8WWM9 190 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 OMA1Q96E52 524 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 METTL2AQ96IZ6 378 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CAMKK2Q96RR4 588 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 EMILIN2Q9BXX0 1053 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 HDHD2Q9H0R4 259 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 RBAKQ9NYW8 714 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 MYMKA6NI61 221 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 NKRFO15226 690 aaKnown RBP eCLIP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 IFNA16P05015 189 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PRKAR1AP10644 381 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ATF6P18850 670 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 FGFR4P22455 802 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 HOXC12P31275 282 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CXCR5P32302 372 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CDC42P60953 191 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CYP24A1Q07973 514 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 GRSF1Q12849 480 aaKnown RBP eCLIP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 MTF1Q14872 753 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 NDUFA9Q16795 377 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 RALGPS1Q5JS13 557 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM270Q6UE05 265 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 UTS2BQ765I0 119 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TAS2R42Q7RTR8 314 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 MAP4K3Q8IVH8 894 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TFB1MQ8WVM0 346 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 RNFT2Q96EX2 444 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 MPP4Q96JB8 637 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TCEAL7Q9BRU2 100 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ENTPD7Q9NQZ7 604 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 C14orf105Q9NVL8 296 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SMPD3Q9NY59 655 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 LSM7Q9UK45 103 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 KCNH4Q9UQ05 1017 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SLC25A27O95847 323 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 DLGAP3O95886 979 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 RXRAP19793 462 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 RPS12P25398 132 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 SLC7A1P30825 629 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PPARDQ03181 441 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 FAPQ12884 760 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF423Q2M1K9 1284 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PLEKHG6Q3KR16 790 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PLA2G4FQ68DD2 849 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 LIN54Q6MZP7 749 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF720Q7Z2F6 126 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 MCOLN2Q8IZK6 566 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF248Q8NDW4 579 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 C11orf70Q9BRQ4 267 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 OR2B2Q9GZK3 357 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 ACTR6Q9GZN1 396 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 EXOSC4Q9NPD3 245 aaKnown RBP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 LATS2Q9NRM7 1088 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 NINJ2Q9NZG7 142 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.3□□□□□ -1.56
SCN1A-201ENST00000303395 AP4E1Q9UPM8 1137 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PLCL2Q9UPR0 1127 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 CYP2D7A0A087X1C5 515 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 GSC2O15499 205 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 TSC22D2O75157 780 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 APOC1P02654 83 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 PAX7P23759 505 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 KDSRQ06136 332 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 IRF5Q13568 498 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 MTMR1Q13613 665 aa5.3□□□□□ -1.56
SCN1A-201ENST00000303395 AKIRIN2Q53H80 203 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms