RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ASTN2O75129 1339 aaPredicted RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 DDX3XO00571 662 aaKnown RBP eCLIP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ADAMDEC1O15204 470 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 NUAK1O60285 661 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 RAG1P15918 1043 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 NOS3P29474 1203 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 EFNA5P52803 228 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 PPARAQ07869 468 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ANKMY2Q8IV38 441 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 KCNB2Q92953 911 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 TXN2Q99757 166 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ABCC10Q5T3U5 1492 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 GPATCH8Q9UKJ3 1502 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CRYZL1O95825 349 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 HOXC6P09630 235 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CCNHP51946 323 aaPredicted RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 RPS8P62241 208 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 RPP38P78345 283 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 SMU1Q2TAY7 513 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 STK40Q8N2I9 435 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 DNAJB14Q8TBM8 379 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 KANSL2Q9H9L4 492 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 TNFRSF10DQ9UBN6 386 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 VPS51Q9UID3 782 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF232Q9UNY5 417 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 AP4E1Q9UPM8 1137 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 KMOO15229 486 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 NPM3O75607 178 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 PRG2P13727 222 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CD6P30203 668 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CDK18Q07002 472 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 SREBF2Q12772 1141 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 E2F2Q14209 437 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 FAM102BQ5T8I3 360 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CHST3Q7LGC8 479 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 TSPAN33Q86UF1 283 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 SRBD1Q8N5C6 995 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 NAT16Q8N8M0 369 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 METTL6Q8TCB7 284 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 QRFPRQ96P65 431 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM120AQ9BXJ8 343 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 WDR41Q9HAD4 459 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 EBF2Q9HAK2 575 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 SUPT7LO94864 414 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 MLYCDO95822 493 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 PDHBP11177 359 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A5P35504 534 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CCNG2Q16589 344 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ALG11Q2TAA5 492 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 TSHZ3Q63HK5 1081 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ARMC8Q8IUR7 673 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ZZZ3Q8IYH5 903 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 LRRC34Q8IZ02 419 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CNTD1Q8N815 330 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ASCC1Q8N9N2 400 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF548Q8NEK5 533 aaPredicted RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 URGCPQ8TCY9 931 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CPNE1Q99829 537 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 SSX3Q99909 188 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM121Q9BTD3 319 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 C14orf93Q9H972 538 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 PRKAG2Q9UGJ0 569 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 RUVBL1Q9Y265 456 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 POFUT2Q9Y2G5 429 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 RAD51CO43502 376 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 SSX4O60224 188 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 DNAJB6O75190 326 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CHRNA5P30532 468 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 NFX1Q12986 1120 aaKnown RBP4.9□□□□□ -1.63
CSMD3-201ENST00000297405 SLC13A2Q13183 592 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 KCNV1Q6PIU1 500 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 THEM5Q8N1Q8 247 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 CDYL2Q8N8U2 506 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 PPA2Q9H2U2 334 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF358Q9NW07 568 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 RDH8Q9NYR8 311 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 PCYOX1Q9UHG3 505 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 DYRK1BQ9Y463 629 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 PCDHGB2Q9Y5G2 931 aa4.9□□□□□ -1.63
CSMD3-201ENST00000297405 ANKRD65E5RJM6 399 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PLD2O14939 933 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TM7SF2O76062 418 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 IFNA17P01571 189 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CYP2E1P05181 493 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GRK4P32298 578 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MMP13P45452 471 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SEC24CP53992 1094 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CBLBQ13191 982 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 XKR9Q5GH70 373 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SGMS1Q86VZ5 419 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 AIFM3Q96NN9 605 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 VPS35Q96QK1 796 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 RASSF1Q9NS23 344 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TRMT13Q9NUP7 481 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 KLHL11Q9NVR0 708 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 EDARQ9UNE0 448 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 HEY1Q9Y5J3 304 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TRPV2Q9Y5S1 764 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TOPBP1Q92547 1522 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms