RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 DHFR2Q86XF0 187 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 HJURPQ8NCD3 748 aaPredicted RBP17.5■□□□□ 0.39
SHANK1-201ENST00000293441 SELENOMQ8WWX9 145 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 NXF3Q9H4D5 531 aaKnown RBP17.5■□□□□ 0.39
SHANK1-201ENST00000293441 C1orf232A0A0U1RR37 186 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 ENO4A6NNW6 628 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 PEX1O43933 1283 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 PTPN4P29074 926 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 BRCC3P46736 316 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 PTF1AQ7RTS3 328 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 POU5F2Q8N7G0 328 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 NDNQ99608 321 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 MRPL45Q9BRJ2 306 aaKnown RBP17.5■□□□□ 0.39
SHANK1-201ENST00000293441 BATF3Q9NR55 127 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 EPN2O95208 641 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 ITGA7Q13683 1181 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 EML3Q32P44 896 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 RNF148Q8N7C7 305 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 PPTC7Q8NI37 304 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 ETNPPLQ8TBG4 499 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 NRDE2Q9H7Z3 1164 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 GUCY1B2O75343 617 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 GOT1P17174 413 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 FOXR1Q6PIV2 292 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 OR5B17Q8NGF7 314 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 FAM45AQ8TCE6 357 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 PROX1Q92786 737 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 OXNAD1Q96HP4 312 aaPredicted RBP17.5■□□□□ 0.39
SHANK1-201ENST00000293441 SEMA3CQ99985 751 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 GEMIN8Q9NWZ8 242 aaKnown RBP17.5■□□□□ 0.39
SHANK1-201ENST00000293441 INVSQ9Y283 1065 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 ADGRA3Q8IWK6 1321 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 CHADO15335 359 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 MMP3P08254 477 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 CCDC166P0CW27 439 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 ATP4AP20648 1035 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 GABRR2P28476 465 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 SMAD3P84022 425 aaKnown RBP17.5■□□□□ 0.39
SHANK1-201ENST00000293441 OASLQ15646 514 aaKnown RBP17.5■□□□□ 0.39
SHANK1-201ENST00000293441 FUCA2Q9BTY2 467 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 AP4S1Q9Y587 144 aa17.5■□□□□ 0.39
SHANK1-201ENST00000293441 HS6ST1O60243 411 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 PIRTP0C851 137 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 IFI35P80217 286 aaPredicted RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 WDR36Q8NI36 951 aaKnown RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 HDAC7Q8WUI4 952 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 EXO5Q9H790 373 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 ASTN2O75129 1339 aaPredicted RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 A0A0B4J269 797 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 FAM25AB3EWG3 89 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 FAM25CB3EWG5 89 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 FAM25GB3EWG6 89 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 VAV1P15498 845 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 TM4SF1P30408 202 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 MRPS35P82673 323 aaKnown RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 IRF8Q02556 426 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 AFTPHQ6ULP2 937 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 RNF145Q96MT1 663 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 FERD3LQ96RJ6 166 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 OR6A2O95222 327 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 ZCWPW2Q504Y3 356 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 CHPFQ8IZ52 775 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 TLR10Q9BXR5 811 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 LTA4HP09960 611 aaKnown RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 RPA3P35244 121 aaPredicted RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 PPP1R26Q5T8A7 1209 aaPredicted RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 STARD8Q92502 1023 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 PRDM16Q9HAZ2 1276 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 ARHGAP28Q9P2N2 729 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 C2CD2Q9Y426 696 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 NEDD8-MDP1E9PL57 170 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 PPM1AP35813 382 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 ABRQ12979 859 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 GET4Q7L5D6 327 aaPredicted RBP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 ASB2Q96Q27 587 aa17.49■□□□□ 0.39
SHANK1-201ENST00000293441 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.49■□□□□ 0.39
SHANK1-201ENST00000293441 CYP1A2P05177 515 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 CRATP43155 626 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 TRIM71Q2Q1W2 868 aaKnown RBP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 TRAF7Q6Q0C0 670 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 CYP2R1Q6VVX0 501 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 RIC1Q4ADV7 1423 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 GLUD1P00367 558 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 TLX1P31314 330 aaPredicted RBP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 OR1D2P34982 312 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 FKBP1BP68106 108 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 DGKKQ5KSL6 1271 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 CNSTQ6PJW8 725 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 EFCAB3Q8N7B9 438 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 KLRG1Q96E93 195 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 MARK4Q96L34 752 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 QRFPRQ96P65 431 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 SIK3Q9Y2K2 1263 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 TNPO3Q9Y5L0 923 aaKnown RBP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 FCHO1O14526 889 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 PIGNO95427 931 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 EVX2Q03828 476 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 KPNB1Q14974 876 aaKnown RBP17.48■□□□□ 0.39
SHANK1-201ENST00000293441 ATP13A4Q4VNC1 1196 aa17.48■□□□□ 0.39
SHANK1-201ENST00000293441 ZNF75CPQ92670 426 aaPredicted RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms