RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SHROOM3Q8TF72 1996 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 F8VZ95 297 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 FFAR2O15552 330 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 LEFTY1O75610 366 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 UCHL3P15374 230 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 HNRNPA2B1P22626 353 aaKnown RBP13.04□□□□□ -0.32
CD44-203ENST00000278386 ERCC5P28715 1186 aaPredicted RBP13.04□□□□□ -0.32
CD44-203ENST00000278386 ABCG1P45844 678 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 DNA2P51530 1060 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 NEK3P51956 506 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 NOMO3P69849 1222 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 ATP11AP98196 1134 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 KCNMA1Q12791 1236 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 CDO1Q16878 200 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 ARSIQ5FYB1 569 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 RETSATQ6NUM9 610 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 ERN2Q76MJ5 926 aaKnown RBP13.04□□□□□ -0.32
CD44-203ENST00000278386 KANSL1Q7Z3B3 1105 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 PTAR1Q7Z6K3 402 aaPredicted RBP13.04□□□□□ -0.32
CD44-203ENST00000278386 TMIEQ8NEW7 156 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 EPS8L1Q8TE68 723 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 CPA5Q8WXQ8 436 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 NT5C3BQ969T7 300 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 ZYG11BQ9C0D3 744 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 TMEM51Q9NW97 253 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 TAB2Q9NYJ8 693 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 CHMP5Q9NZZ3 219 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 ATRXP46100 2492 aa13.04□□□□□ -0.32
CD44-203ENST00000278386 LOC400499M0QZD8 3231 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 BAHCC1Q9P281 2608 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 IGLV3-10A0A075B6K4 115 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 ILVBLA1L0T0 632 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 DRGXA6NNA5 263 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 SIGLEC6O43699 453 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 CKMT2P17540 419 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 SERPINH1P50454 418 aaKnown RBP13.03□□□□□ -0.32
CD44-203ENST00000278386 SEMG2Q02383 582 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 TARDBPQ13148 414 aaKnown RBP eCLIP13.03□□□□□ -0.32
CD44-203ENST00000278386 MAPK8IP2Q13387 824 aaPredicted RBP13.03□□□□□ -0.32
CD44-203ENST00000278386 ILKQ13418 452 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 ACAP1Q15027 740 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 ZNF284Q2VY69 593 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 SEL1L3Q68CR1 1132 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 TRNP1Q6NT89 227 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 DPY19L2P1Q6NXN4 242 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 NEK5Q6P3R8 708 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 FBXL19Q6PCT2 694 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 DPY19L3Q6ZPD9 716 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 EMC1Q8N766 993 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 TMEM145Q8NBT3 493 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 OR13H1Q8NG92 308 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 SLC20A1Q8WUM9 679 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 TSC1Q92574 1164 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 C1orf74Q96LT6 269 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 HAPLN3Q96S86 360 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 ZDHHC6Q9H6R6 413 aa13.03□□□□□ -0.32
CD44-203ENST00000278386 SAMSN1Q9NSI8 373 aaKnown RBP13.03□□□□□ -0.32
CD44-203ENST00000278386 FCF1Q9Y324 198 aaKnown RBP13.03□□□□□ -0.32
CD44-203ENST00000278386 A6NNZ2 444 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 RNF103O00237 685 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 GFPT2O94808 682 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 TPM2P07951 284 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 ADRB3P13945 408 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 EEF1GP26641 437 aaKnown RBP13.02□□□□□ -0.33
CD44-203ENST00000278386 CCNHP51946 323 aaPredicted RBP13.02□□□□□ -0.33
CD44-203ENST00000278386 CLDN2P57739 230 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 GNA12Q03113 381 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 ARL13BQ3SXY8 428 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 TCP11X2Q5H9J9 407 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 KIAA1161Q6NSJ0 714 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 RWDD4Q6NW29 188 aaKnown RBP13.02□□□□□ -0.33
CD44-203ENST00000278386 ZNF783Q6ZMS7 281 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 GCNT7Q6ZNI0 430 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 TMC6Q7Z403 805 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 PHLDB2Q86SQ0 1253 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 RYBPQ8N488 228 aaPredicted RBP13.02□□□□□ -0.33
CD44-203ENST00000278386 PCDH20Q8N6Y1 951 aaKnown RBP13.02□□□□□ -0.33
CD44-203ENST00000278386 C11orf70Q9BRQ4 267 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 NAA15Q9BXJ9 866 aaKnown RBP13.02□□□□□ -0.33
CD44-203ENST00000278386 HDAC8Q9BY41 377 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 STK33Q9BYT3 514 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 TM6SF2Q9BZW4 377 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 CEP44Q9C0F1 390 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 TMEM59LQ9UK28 342 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 ZFR2Q9UPR6 939 aaKnown RBP13.02□□□□□ -0.33
CD44-203ENST00000278386 WASF2Q9Y6W5 498 aa13.02□□□□□ -0.33
CD44-203ENST00000278386 A0A087WV48 116 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 EIF4E1BA6NMX2 242 aaKnown RBP13.01□□□□□ -0.33
CD44-203ENST00000278386 TRIM38O00635 465 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 PIAS2O75928 621 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 ALPPL2P10696 532 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 DGKAP23743 735 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 ACP1P24666 158 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 ITGB7P26010 798 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 SDC4P31431 198 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 ETFBP38117 255 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 ARF5P84085 180 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 C15orf59Q2T9L4 293 aaPredicted RBP13.01□□□□□ -0.33
CD44-203ENST00000278386 PROX2Q3B8N5 592 aa13.01□□□□□ -0.33
CD44-203ENST00000278386 KDM7AQ6ZMT4 941 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms