RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 CHRNA4P43681 627 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 SERPINB9P50453 376 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 ZBTB17Q13105 803 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 TMEM259Q4ZIN3 620 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 PAN2Q504Q3 1202 aaKnown RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 FAM160B1Q5W0V3 765 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 LPCAT2Q7L5N7 544 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 CLVS1Q8IUQ0 354 aaPredicted RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 ARHGAP18Q8N392 663 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 DCBLD1Q8N8Z6 715 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 PDCD6IPQ8WUM4 868 aaKnown RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 NUDT8Q8WV74 236 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 KBTBD7Q8WVZ9 684 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 NIFKQ9BYG3 293 aaKnown RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 ILKAPQ9H0C8 392 aaPredicted RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 FAF1Q9UNN5 650 aaPredicted RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 COL11A1P12107 1806 aaPredicted RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 ARHGEF37A1IGU5 675 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 MAFGO15525 162 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 GRID2O43424 1007 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 AKAP10O43572 662 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 NFKB1P19838 968 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 MPP3Q13368 585 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 AGKQ53H12 422 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 ZNF789Q5FWF6 425 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 IER5Q5VY09 327 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 KLHL35Q6PF15 583 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 FAM35AQ86V20 835 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 KCNMB4Q86W47 210 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 FSTL5Q8N475 847 aaPredicted RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 IPMKQ8NFU5 416 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 SLC7A14Q8TBB6 771 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 MIPOL1Q8TD10 442 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 GPR20Q99678 358 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 CDHR5Q9HBB8 845 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 FNDC3AQ9Y2H6 1198 aaKnown RBP13.2□□□□□ -0.3
SNX1-201ENST00000261889 PCDHB12Q9Y5F1 795 aa13.2□□□□□ -0.3
SNX1-201ENST00000261889 UNC80Q8N2C7 3258 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.19□□□□□ -0.3
SNX1-201ENST00000261889 B4GAT1O43505 415 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 TXNP10599 105 aaKnown RBP13.19□□□□□ -0.3
SNX1-201ENST00000261889 PGAM1P18669 254 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 CD300CQ08708 224 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 CSHL1Q14406 222 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 PDK2Q15119 407 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 SNX29P2Q8IUI4 249 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 RNF139Q8WU17 664 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 NXF3Q9H4D5 531 aaKnown RBP13.19□□□□□ -0.3
SNX1-201ENST00000261889 STK39Q9UEW8 545 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 CPA4Q9UI42 421 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 DSEQ9UL01 958 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 J3QRK9 145 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 GCATO75600 419 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 TRMUO75648 421 aaKnown RBP13.19□□□□□ -0.3
SNX1-201ENST00000261889 SBK3P0C264 359 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 CTBSQ01459 385 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 SEMA5AQ13591 1074 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 GRM2Q14416 872 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 PLCL1Q15111 1095 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 LCLAT1Q6UWP7 414 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 TSPAN14Q8NG11 270 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 CXorf38Q8TB03 319 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 DCPSQ96C86 337 aaKnown RBP13.19□□□□□ -0.3
SNX1-201ENST00000261889 FBXL8Q96CD0 374 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 QKIQ96PU8 341 aaKnown RBP eCLIP13.19□□□□□ -0.36e-10■■□□□ 13.4
SNX1-201ENST00000261889 BRD8Q9H0E9 1235 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 THEGQ9P2T0 379 aa13.19□□□□□ -0.3
SNX1-201ENST00000261889 LRRC14BA6NHZ5 514 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 ADM5C9JUS6 153 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 SPTLC1O15269 473 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 THRAP10827 490 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 TPP2P29144 1249 aaPredicted RBP13.18□□□□□ -0.3
SNX1-201ENST00000261889 PPP1R8Q12972 351 aaKnown RBP13.18□□□□□ -0.3
SNX1-201ENST00000261889 ATP1A4Q13733 1029 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 MGAT5BQ3V5L5 792 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 FSCBQ5H9T9 825 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 FAM91A1Q658Y4 838 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.18□□□□□ -0.3
SNX1-201ENST00000261889 GAB3Q8WWW8 586 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 NCSTNQ92542 709 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 OTUD5Q96G74 571 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 TXNRD2Q9NNW7 524 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 LTB4R2Q9NPC1 389 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 PIGVQ9NUD9 493 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 TLK1Q9UKI8 766 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 CDY2AQ9Y6F7 541 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 CDY1Q9Y6F8 540 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 TTC3P53804 2025 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 AGRPO00253 132 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 PMPCBO75439 489 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 GRIA3P42263 894 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 GEN1Q17RS7 908 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 RWDD4Q6NW29 188 aaKnown RBP13.18□□□□□ -0.3
SNX1-201ENST00000261889 CNSTQ6PJW8 725 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 CATSPERGQ6ZRH7 1159 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 FASTKD5Q7L8L6 764 aaKnown RBP13.18□□□□□ -0.3
SNX1-201ENST00000261889 MFSD6LQ8IWD5 586 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 NUP93Q8N1F7 819 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 LPGAT1Q92604 370 aa13.18□□□□□ -0.3
SNX1-201ENST00000261889 RBBP8Q99708 897 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms