RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ZNF24P17028 368 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 GP5P40197 560 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 GARSP41250 739 aaKnown RBP14.59□□□□□ -0.07
SDC1-201ENST00000254351 ALDH3B2P48448 385 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 PRKCQQ04759 706 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 STRIP1Q5VSL9 837 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 PMF1Q6P1K2 205 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 PIGZQ86VD9 579 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 SPPL2CQ8IUH8 684 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 TTC16Q8NEE8 873 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 CNDP1Q96KN2 507 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 EPS8L2Q9H6S3 715 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 ZNF302Q9NR11 478 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 CHRAC1Q9NRG0 131 aa14.59□□□□□ -0.07
SDC1-201ENST00000254351 PPP1R1BQ9UD71 204 aaPredicted RBP14.59□□□□□ -0.07
SDC1-201ENST00000254351 KPNA7A9QM74 516 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 C9IYK1 514 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 CBFA2T3O75081 653 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 POLBP06746 335 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 LCP1P13796 627 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 KCNA2P16389 499 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 TRIM25Q14258 630 aaKnown RBP14.58□□□□□ -0.08
SDC1-201ENST00000254351 RAB39AQ14964 217 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 EEF1DP3Q658K8 133 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 BORAQ6PGQ7 559 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 TIFABQ6ZNK6 161 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 LYSMD3Q7Z3D4 306 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 CDKL3Q8IVW4 592 aaPredicted RBP14.58□□□□□ -0.08
SDC1-201ENST00000254351 CCDC185Q8N715 623 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 GFM2Q969S9 779 aaKnown RBP14.58□□□□□ -0.08
SDC1-201ENST00000254351 TMEM176AQ96HP8 235 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 ANKRD36BP1Q96IX9 119 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 NEURL2Q9BR09 285 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 PORCNQ9H237 461 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 RPF2Q9H7B2 306 aaKnown RBP14.58□□□□□ -0.08
SDC1-201ENST00000254351 PDLIM7Q9NR12 457 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 DTLQ9NZJ0 730 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 MAN1A2O60476 641 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 SLC7A2P52569 658 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 XKR3Q5GH77 459 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 ILDR2Q71H61 639 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 NANOGNBQ7Z5D8 188 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 FNIP1Q8TF40 1166 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 SREK1Q8WXA9 508 aaKnown RBP14.58□□□□□ -0.08
SDC1-201ENST00000254351 LRRC39Q96DD0 335 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 ZNF597Q96LX8 424 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 MAF1Q9H063 256 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 FAM96AQ9H5X1 160 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 ZBTB26Q9HCK0 441 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 IGSF9Q9P2J2 1179 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 GIMAP2Q9UG22 337 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 TLK1Q9UKI8 766 aa14.58□□□□□ -0.08
SDC1-201ENST00000254351 BCLAF3A2AJT9 711 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 TGM2P21980 687 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 NDST1P52848 882 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 BFSP2Q13515 415 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 USP10Q14694 798 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 ADRM1Q16186 407 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 KIZQ2M2Z5 673 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 PRR23BQ6ZRT6 265 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 ACOT1Q86TX2 421 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 FAM35AQ86V20 835 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 TBC1D15Q8TC07 691 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 FBRSL1Q9HCM7 1045 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 WDR37Q9Y2I8 494 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 PCDHGA7Q9Y5G6 932 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 TRIM38O00635 465 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 OXSR1O95747 527 aaPredicted RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 GABRB3P28472 473 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 CCND2P30279 289 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 GJA8P48165 433 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 RPL26P61254 145 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 YBX1P67809 324 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 CAPRIN1Q14444 709 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 DALRD3Q5D0E6 543 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 TBCELQ5QJ74 424 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 KCTD8Q6ZWB6 473 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 MCUQ8NE86 351 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 DUS2Q9NX74 493 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 GGA3Q9NZ52 723 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 ADGRA2Q96PE1 1338 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 BRCA1P38398 1863 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 HOXC6P09630 235 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 PGAM1P18669 254 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 PRDX6P30041 224 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 CDH5P33151 784 aaPredicted RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 CASP2P42575 452 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 MAGEA3P43357 314 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 NUMBP49757 651 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 SEPT6Q14141 434 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 MAPK11Q15759 364 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 GOLGA7BQ2TAP0 167 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 TRIM16LQ309B1 348 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 OTUD3Q5T2D3 398 aaPredicted RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 SNRNP48Q6IEG0 339 aaKnown RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 VSIG10LQ86VR7 867 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 NT5DC4Q86YG4 428 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 SIX6OS1Q8N1H7 587 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 MAGEE2Q8TD90 523 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms