RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CEP250Q9BV73 2442 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 FCARP24071 287 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 TARSP26639 723 aaKnown RBP8.84□□□□□ -0.99
VPS4B-201ENST00000238497 STIP1P31948 543 aaKnown RBP8.84□□□□□ -0.99
VPS4B-201ENST00000238497 CACNA2D1P54289 1103 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 PDE1BQ01064 536 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 PRKCQQ04759 706 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 ITKQ08881 620 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 INCA1Q0VD86 236 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 STILQ15468 1287 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 EML3Q32P44 896 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 EFHC2Q5JST6 749 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 GPRIN1Q7Z2K8 1008 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 CELF5Q8N6W0 485 aaKnown RBP8.84□□□□□ -0.99
VPS4B-201ENST00000238497 PQLC3Q8N755 202 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 PJA1Q8NG27 643 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 TTC25Q96NG3 672 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 KCTD15Q96SI1 283 aaPredicted RBP8.84□□□□□ -0.99
VPS4B-201ENST00000238497 LMAN1LQ9HAT1 526 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 PSMC3IPQ9P2W1 217 aaPredicted RBP8.84□□□□□ -0.99
VPS4B-201ENST00000238497 CNOT1A5YKK6 2376 aaKnown RBP8.84□□□□□ -0.99
VPS4B-201ENST00000238497 C2orf78A6NCI8 922 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 UBOX5O94941 541 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 FOXN2P32314 431 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 TPI1P60174 286 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 USP46P62068 366 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 EFHC1Q5JVL4 640 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 FAM171BQ6P995 826 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 TRMT10BQ6PF06 316 aaKnown RBP8.84□□□□□ -0.99
VPS4B-201ENST00000238497 TSSK4Q6SA08 328 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 SPATA21Q7Z572 469 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 E2F7Q96AV8 911 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 CSPG4P5Q96PW8 444 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 SLC22A12Q96S37 553 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 MECRQ9BV79 373 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 PCMTD2Q9NV79 361 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 HSFX1Q9UBD0 423 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 SFMBT1Q9UHJ3 866 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 STAP1Q9ULZ2 295 aa8.84□□□□□ -0.99
VPS4B-201ENST00000238497 TCRBV9S1A1TA0A576 114 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 FAM72CH0Y354 149 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 ALOX15BO15296 676 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 MSI1O43347 362 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 F11P03951 625 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 IRF1P10914 325 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 MBL2P11226 248 aaPredicted RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 YWHAQP27348 245 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PCK1P35558 622 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 WDR4P57081 412 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 CSTF1Q05048 431 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 NOMO1Q15155 1222 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 FAM72AQ5TYM5 149 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 FAM72DQ6L9T8 149 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 FAM35AQ86V20 835 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 MON1AQ86VX9 555 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 FAM72BQ86X60 149 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PAF1Q8N7H5 531 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 NIPA2Q8N8Q9 360 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 SLCO2A1Q92959 643 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 LRRC3BQ96PB8 259 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 CYTH2Q99418 400 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 WDCPQ9H6R7 721 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 SHOC2Q9UQ13 582 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 FNDC3AQ9Y2H6 1198 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 WNT6Q9Y6F9 365 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 NUP205Q92621 2012 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 CFAP54Q96N23 3096 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 CXorf49A8MYA2 514 aaPredicted RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 BHMG1C9JSJ3 638 aaPredicted RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 MAN2B1O00754 1011 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 MFSD11O43934 449 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 IL4RP24394 825 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 L1CAMP32004 1257 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PGGT1BP53609 377 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 TRPM8Q7Z2W7 1104 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 TMEM110Q86TL2 294 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 MIB1Q86YT6 1006 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 SH3RF2Q8TEC5 729 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 FNIP1Q8TF40 1166 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 RNF139Q8WU17 664 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 TFB1MQ8WVM0 346 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 USP13Q92995 863 aaPredicted RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 FERMT1Q9BQL6 677 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 TACO1Q9BSH4 297 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 SLC4A5Q9BY07 1137 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 SMYD2Q9NRG4 433 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PIGVQ9NUD9 493 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PAK5Q9P286 719 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PDCD11Q14690 1871 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 CCT8L1PA6NM43 557 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 GFRA3O60609 400 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 STK10O94804 968 aaKnown RBP8.83□□□□□ -1
VPS4B-201ENST00000238497 GLULP15104 373 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PSMB4P28070 264 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PDK2Q15119 407 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 PON2Q15165 354 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 C16orf46Q6P387 395 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 ZCCHC23Q6ZST2 131 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 CLEC20AQ6ZU45 233 aa8.83□□□□□ -1
VPS4B-201ENST00000238497 RFX8Q6ZV50 586 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms