RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 ZFHX4Q86UP3 3567 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 IGLV3-10A0A075B6K4 115 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 C1QTNF3-AMACRE9PGA6 284 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 TLR4O00206 839 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 SLC31A1O15431 190 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ZNF883P0CG24 379 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 PRLRP16471 622 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 SDC4P31431 198 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 CHRNA3P32297 505 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 RFC1P35251 1148 aaPredicted RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 SCNN1AP37088 669 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 NSFP46459 744 aaKnown RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 CCR5P51681 352 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 TAS2R38P59533 333 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 TYRO3Q06418 890 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 PTP4A2Q12974 167 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 MTA1Q13330 715 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 HNRNPDQ14103 355 aaKnown RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 NCAPHQ15003 741 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 SUZ12Q15022 739 aaKnown RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 CLEC16AQ2KHT3 1053 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ZNF423Q2M1K9 1284 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 C6orf118Q5T5N4 469 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 CCDC183Q5T5S1 534 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 AGBL4Q5VU57 503 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 FAM46CQ5VWP2 391 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 RAB44Q7Z6P3 723 aaPredicted RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 SETD3Q86TU7 594 aaPredicted RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ZNF677Q86XU0 584 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 CCDC185Q8N715 623 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 NETO2Q8NC67 525 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ANKRD20A12PQ8NF67 263 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ZCCHC14Q8WYQ9 949 aaKnown RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ARRDC3Q96B67 414 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 HAPLN3Q96S86 360 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 TMEM121BQ9BXQ6 578 aaPredicted RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ZYG11BQ9C0D3 744 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 HSD3B7Q9H2F3 369 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 CAAP1Q9H8G2 361 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ATP13A1Q9HD20 1204 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 OSGEPQ9NPF4 335 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 NDFIP2Q9NV92 336 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 ARHGAP20Q9P2F6 1191 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 OR12D3Q9UGF7 316 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 DNAI1Q9UI46 699 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 APOBEC2Q9Y235 224 aaKnown RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 HS3ST2Q9Y278 367 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 MSRB2Q9Y3D2 182 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 FARP1Q9Y4F1 1045 aaPredicted RBP10.53□□□□□ -0.72
SCN1A-222ENST00000642141 NEUROG3Q9Y4Z2 214 aa10.53□□□□□ -0.72
SCN1A-222ENST00000642141 DMXL2Q8TDJ6 3036 aa10.52□□□□□ -0.72
SCN1A-222ENST00000642141 CACNA1BQ00975 2339 aa10.52□□□□□ -0.72
SCN1A-222ENST00000642141 A0A1W2PR77 199 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 FAM149AA5PLN7 773 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 C2CD4BA6NLJ0 364 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 TMCO5BA8MYB1 307 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 FLRT2O43155 660 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 TEX33O43247 280 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 PLRG1O43660 514 aaKnown RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 RNGTTO60942 597 aaKnown RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 TRIM16O95361 564 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 PLEKP08567 350 aaPredicted RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 KRT3P12035 628 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 UNGP13051 313 aaPredicted RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 GKP32189 559 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 GRK6P43250 576 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 CCT8P50990 548 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 GNA12Q03113 381 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 BNIP3Q12983 259 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 SHBQ15464 509 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 ANO6Q4KMQ2 910 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 SMYD5Q6GMV2 418 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 SCYL2Q6P3W7 929 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 DBX2Q6ZNG2 339 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 DPY19L3Q6ZPD9 716 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 APTXQ7Z2E3 356 aaKnown RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 BNIPLQ7Z465 357 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 PRPF39Q86UA1 669 aaKnown RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 SPATS2Q86XZ4 545 aaKnown RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 DNAAF5Q86Y56 855 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 PYROXD2Q8N2H3 581 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 RYBPQ8N488 228 aaPredicted RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 DCAF4L2Q8NA75 395 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 OR6K2Q8NGY2 324 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 FAM172AQ8WUF8 416 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 SKA1Q96BD8 255 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 CDC6Q99741 560 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 AGPAT1Q99943 283 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 SELENOOQ9BVL4 669 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 TM6SF2Q9BZW4 377 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 FZD3Q9NPG1 666 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 GDF3Q9NR23 364 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 TOR4AQ9NXH8 423 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 TMEM63CQ9P1W3 806 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 ZNF212Q9UDV6 495 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 FCF1Q9Y324 198 aaKnown RBP10.52□□□□□ -0.73
SCN1A-222ENST00000642141 PCDHGB2Q9Y5G2 931 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 PLXNA2O75051 1894 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 KNL1Q8NG31 2342 aa10.52□□□□□ -0.73
SCN1A-222ENST00000642141 FREM2Q5SZK8 3169 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms