RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CHRNA3P32297 505 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 GEMIN4P57678 1058 aaKnown RBP12.2□□□□□ -0.46
UPF3B-204ENST00000619445 PPP2CBP62714 309 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 PPP2CAP67775 309 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 IL9RQ01113 521 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 APBA1Q02410 837 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 CNTN1Q12860 1018 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 ARL13BQ3SXY8 428 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 MIIPQ5JXC2 388 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 DCP2Q8IU60 420 aaKnown RBP12.2□□□□□ -0.46
UPF3B-204ENST00000619445 CACTIN-AS1Q8N1I8 211 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 NXPE2Q96DL1 559 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 KLHDC7BQ96G42 594 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 HDAC8Q9BY41 377 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 ARHGAP20Q9P2F6 1191 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 PPARGC1AQ9UBK2 798 aaKnown RBP12.2□□□□□ -0.46
UPF3B-204ENST00000619445 VPS51Q9UID3 782 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 GPSM3Q9Y4H4 160 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 TRPM6Q9BX84 2022 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 ADAMTS20P59510 1910 aa12.2□□□□□ -0.46
UPF3B-204ENST00000619445 TRABD2BA6NFA1 517 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 TAF4O00268 1085 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 KPNA3O00505 521 aaPredicted RBP12.19□□□□□ -0.46
UPF3B-204ENST00000619445 RIOK3O14730 519 aaKnown RBP12.19□□□□□ -0.46
UPF3B-204ENST00000619445 AKT2P31751 481 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 DPCR1Q3MIW9 517 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 TCP11X2Q5H9J9 407 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 SFMBT2Q5VUG0 894 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 TRIM72Q6ZMU5 477 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 C14orf80Q86SX3 495 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 XYLT1Q86Y38 959 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 GATAD2AQ86YP4 633 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 ZNF683Q8IZ20 524 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 PCDH20Q8N6Y1 951 aaKnown RBP12.19□□□□□ -0.46
UPF3B-204ENST00000619445 OR2A12Q8NGT7 310 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 IFT43Q96FT9 208 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 NAA15Q9BXJ9 866 aaKnown RBP12.19□□□□□ -0.46
UPF3B-204ENST00000619445 ZYG11BQ9C0D3 744 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 EVA1BQ9NVM1 165 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 SARDHQ9UL12 918 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 FHOD1Q9Y613 1164 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 WDFY3Q8IZQ1 3526 aa12.19□□□□□ -0.46
UPF3B-204ENST00000619445 F8VZ95 297 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 BNIP3LO60238 219 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 CNTN5O94779 1100 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 JUPP14923 745 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 CKMT2P17540 419 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 HNRNPA2B1P22626 353 aaKnown RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 MAT2AP31153 395 aaKnown RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 E2F1Q01094 437 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 NRG1Q02297 640 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 SHBQ15464 509 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ALFQ53S48 1182 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 CCDC157Q569K6 752 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 FKBP15Q5T1M5 1219 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 PIP5KL1Q5T9C9 394 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 OTUD1Q5VV17 481 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 C22orf39Q6P5X5 142 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 DHRS13Q6UX07 377 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ERN2Q76MJ5 926 aaKnown RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 HORMAD1Q86X24 394 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 PLPP6Q8IY26 295 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 EID2Q8N6I1 236 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ANKRD20A12PQ8NF67 263 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 OR52K2Q8NGK3 314 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 EPS8L1Q8TE68 723 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 LRIG1Q96JA1 1093 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 TBCBQ99426 244 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 IL36AQ9UHA7 158 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 TMEM59LQ9UK28 342 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 AJAP1Q9UKB5 411 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 DOCK9Q9BZ29 2069 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 BAHCC1Q9P281 2608 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 CBX4O00257 560 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ENDOD1O94919 500 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 PNMA6AP0CW24 399 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ALPPL2P10696 532 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 SDC4P31431 198 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 FLT3P36888 993 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 GGCXP38435 758 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 MAPKAPK2P49137 400 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ACADVLP49748 655 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 SERPINH1P50454 418 aaKnown RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 IRAK1P51617 712 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 NEK3P51956 506 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 NOMO3P69849 1222 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 KCNMA1Q12791 1236 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ZNF211Q13398 564 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 CAMK2BQ13554 666 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 TAF3Q5VWG9 929 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 KIAA1161Q6NSJ0 714 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 DPY19L2P1Q6NXN4 242 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 BNIPLQ7Z465 357 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 TFAP2DQ7Z6R9 452 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 TMEM145Q8NBT3 493 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 MDM1Q8TC05 714 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ENOX1Q8TC92 643 aaKnown RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 TSC1Q92574 1164 aa12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ISG20Q96AZ6 181 aaKnown RBP12.18□□□□□ -0.46
UPF3B-204ENST00000619445 ARHGEF26Q96DR7 871 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms