RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 RMDN3Q96TC7 470 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 TTC1Q99614 292 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 HEPHQ9BQS7 1158 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 AIFM2Q9BRQ8 373 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 VN1R3Q9BXE9 311 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ANO3Q9BYT9 981 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ELAC1Q9H777 363 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 MRPL17Q9NRX2 175 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ATP8A2Q9NTI2 1148 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 TMEM74BQ9NUR3 256 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 COL20A1Q9P218 1284 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 DMTF1Q9Y222 760 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 APOBEC2Q9Y235 224 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 NOC2LQ9Y3T9 749 aaKnown RBP4.82□□□□□ -1.64
LINC00540-201ENST00000611481 DAAM1Q9Y4D1 1078 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 ATMQ13315 3056 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 MGAQ8IWI9 3026 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 PTPRBP23467 1997 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 F8P00451 2351 aa4.82□□□□□ -1.64
LINC00540-201ENST00000611481 FLNCQ14315 2725 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ABCA7Q8IZY2 2146 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF532Q9HCE3 1301 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 A0A1B0GTW7 788 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 CFAP69A5D8W1 941 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 FAM149AA5PLN7 773 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 CXorf49A8MYA2 514 aaPredicted RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 TEX28O15482 410 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 TLX3O43711 291 aaPredicted RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ECI2O75521 394 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 RPS6KA5O75582 802 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 PRDM1O75626 825 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 MBD4O95243 580 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 CT47B1P0C2W7 299 aaPredicted RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 MYCLP12524 364 aaPredicted RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 NEK3P51956 506 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ATXN3P54252 364 aaPredicted RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 OCRLQ01968 901 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 RHDQ02161 417 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 OCA2Q04671 838 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 RNASELQ05823 741 aaKnown RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 TRIM25Q14258 630 aaKnown RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 PCBP1Q15365 356 aaKnown RBP eCLIP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 CCDC96Q2M329 555 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 MARCH8Q5T0T0 291 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF280DQ6N043 979 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 CTR9Q6PD62 1173 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 TOGARAM2Q6ZUX3 1019 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 PALB2Q86YC2 1186 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF366Q8N895 744 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 C9orf106Q8NAJ2 232 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ING5Q8WYH8 240 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 TBC1D5Q92609 795 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 USP7Q93009 1102 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 MED8Q96G25 268 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 FUBP3Q96I24 572 aaKnown RBP eCLIP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ELAC2Q9BQ52 826 aaKnown RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 HERPUD2Q9BSE4 406 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 GTPBP2Q9BX10 602 aaKnown RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 NUSAP1Q9BXS6 441 aaKnown RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 TCF7L1Q9HCS4 588 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 FSCN3Q9NQT6 498 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ZDHHC7Q9NXF8 308 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 IP6K2Q9UHH9 426 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 PNMA8BQ9ULN7 279 aaPredicted RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ST3GAL5Q9UNP4 418 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 MAN2B2Q9Y2E5 1009 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 EML5Q05BV3 1969 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 KIF26AQ9ULI4 1882 aaPredicted RBP4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ITPR2Q14571 2701 aa4.81□□□□□ -1.64
LINC00540-201ENST00000611481 ICE1Q9Y2F5 2266 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 WDR81Q562E7 1941 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 MBLAC1A4D2B0 266 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 CGB1A6NKQ9 187 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 IKBKBO14920 756 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF500O60304 480 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 URODP06132 367 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 MARK3P27448 753 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 PTPN7P35236 360 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 DHPSP49366 369 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 PPM1FP49593 454 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 SP4Q02446 784 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 SAFBQ15424 915 aaKnown RBP eCLIP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 TERF2Q15554 542 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 MAPK6Q16659 721 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 USH1GQ495M9 461 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ALFQ53S48 1182 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 RRP12Q5JTH9 1297 aaKnown RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 DGKKQ5KSL6 1271 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 TANGO2Q6ICL3 276 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 PDXDC1Q6P996 788 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF280BQ86YH2 543 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF444Q8N0Y2 327 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ANKRD42Q8N9B4 389 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 Q8N9P0 234 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 TTC17Q96AE7 1141 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 MCRS1Q96EZ8 462 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ZNF778Q96MU6 729 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 ZSWIM1Q9BR11 485 aa4.8□□□□□ -1.64
LINC00540-201ENST00000611481 MRPL9Q9BYD2 267 aaKnown RBP4.8□□□□□ -1.64
LINC00540-201ENST00000611481 MS4A5Q9H3V2 200 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms