RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PABPC3Q9H361 631 aaKnown RBP19.79■□□□□ 0.76
UPF1-212ENST00000601689 DYRK4Q9NR20 520 aa19.79■□□□□ 0.76
UPF1-212ENST00000601689 H3BRJ5 948 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 MCF2LO15068 1137 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 CYLC1P35663 651 aaPredicted RBP19.78■□□□□ 0.76
UPF1-212ENST00000601689 PSMD8P48556 350 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 ZNF252P-AS1Q0IIN9 211 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 SPA17Q15506 151 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 ASTE1Q2TB18 679 aaPredicted RBP19.78■□□□□ 0.76
UPF1-212ENST00000601689 ZFYVE27Q5T4F4 411 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 DEFB119Q8N690 84 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 PCDH20Q8N6Y1 951 aaKnown RBP19.78■□□□□ 0.76
UPF1-212ENST00000601689 FRS2Q8WU20 508 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 CASKIN2Q8WXE0 1202 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 ZNF419Q96HQ0 510 aaPredicted RBP19.78■□□□□ 0.76
UPF1-212ENST00000601689 HSPA12BQ96MM6 686 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 ACE2Q9BYF1 805 aaPredicted RBP19.78■□□□□ 0.76
UPF1-212ENST00000601689 TRIM7Q9C029 511 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 MTG2Q9H4K7 406 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 ZNF212Q9UDV6 495 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 INTUQ9ULD6 942 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 FZD4Q9ULV1 537 aa19.78■□□□□ 0.76
UPF1-212ENST00000601689 ARHGAP42A6NI28 874 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 LRRC72A6NJI9 287 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 KDELR3O43731 214 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 RNASEH2AO75792 299 aaKnown RBP19.77■□□□□ 0.76
UPF1-212ENST00000601689 SEMA4FO95754 770 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 PRNPP04156 253 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 C7P10643 843 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 SERPINH1P50454 418 aaKnown RBP19.77■□□□□ 0.76
UPF1-212ENST00000601689 DNA2P51530 1060 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 NDST2P52849 883 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 KRT81Q14533 505 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 DUOXA1Q1HG43 343 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 LINGO4Q6UY18 593 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 Q6ZVU0 165 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 CCDC170Q8IYT3 715 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 HDDC3Q8N4P3 179 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 LZTR1Q8N653 840 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 TEKT4Q8WW24 435 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 HSPH1Q92598 858 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 PPP1R16AQ96I34 528 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 GPATCH2LQ9NWQ4 482 aa19.77■□□□□ 0.76
UPF1-212ENST00000601689 TPX2Q9ULW0 747 aaKnown RBP19.77■□□□□ 0.76
UPF1-212ENST00000601689 NYNRINQ9P2P1 1898 aaKnown RBP19.77■□□□□ 0.76
UPF1-212ENST00000601689 CHD5Q8TDI0 1954 aa19.77■□□□□ 0.75
UPF1-212ENST00000601689 MID1O15344 667 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 BUB1O43683 1085 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 GOT1P17174 413 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 PTGER3P43115 390 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 HCAR3P49019 387 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 SNRPD1P62314 119 aaKnown RBP19.76■□□□□ 0.75
UPF1-212ENST00000601689 RAD51Q06609 339 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 SEMA3BQ13214 749 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 ODF2Q5BJF6 829 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 PLA2G2CQ5R387 149 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 C22orf39Q6P5X5 142 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 RFX8Q6ZV50 586 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 MAP7D3Q8IWC1 876 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 UMODL1-AS1Q8N2C9 162 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 TC2NQ8N9U0 490 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 ARHGEF26Q96DR7 871 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 FAM129BQ96TA1 746 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 MAGEB5Q9BZ81 275 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 SPTLC3Q9NUV7 552 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 NDFIP2Q9NV92 336 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 CDV3Q9UKY7 258 aaKnown RBP19.76■□□□□ 0.75
UPF1-212ENST00000601689 GON4LQ3T8J9 2241 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 PI4KAP42356 2102 aa19.76■□□□□ 0.75
UPF1-212ENST00000601689 A0A1W2PP55 124 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 METTL12A8MUP2 240 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 MT-CO1P00395 513 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 KRT7P08729 469 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 ITPKAP23677 461 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 CHRNA3P32297 505 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 ACVRL1P37023 503 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 ARHGAP25P42331 645 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 ATXN3P54252 364 aaPredicted RBP19.75■□□□□ 0.75
UPF1-212ENST00000601689 ARF5P84085 180 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 CCDC6Q16204 474 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 DPYSL2Q16555 572 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 SMTNL2Q2TAL5 461 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 DCAF12L1Q5VU92 463 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 GAS2L3Q86XJ1 694 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 RYBPQ8N488 228 aaPredicted RBP19.75■□□□□ 0.75
UPF1-212ENST00000601689 ARFGAP1Q8N6T3 406 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 PIP4K2CQ8TBX8 421 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 SNX19Q92543 992 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 ISG20Q96AZ6 181 aaKnown RBP19.75■□□□□ 0.75
UPF1-212ENST00000601689 BTBD6Q96KE9 485 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 PANX2Q96RD6 677 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 PEBP4Q96S96 227 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 KCTD15Q96SI1 283 aaPredicted RBP19.75■□□□□ 0.75
UPF1-212ENST00000601689 PARD6AQ9NPB6 346 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 CD93Q9NPY3 652 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.75■□□□□ 0.75
UPF1-212ENST00000601689 IL36AQ9UHA7 158 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 PILRBQ9UKJ0 227 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 NENFQ9UMX5 172 aa19.75■□□□□ 0.75
UPF1-212ENST00000601689 FAM47DPA6NHR8 397 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms