RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TRIM38O00635 465 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 BRINP1O60477 761 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 HSF2BPO75031 334 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 SDC3O75056 442 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 MT-CO3P00414 261 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 PRKCSHP14314 528 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-212ENST00000597995 DGKAP23743 735 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 NUMBP49757 651 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 CDH4P55283 916 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 TAS2R38P59533 333 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 KRT83P78385 493 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 CENPCQ03188 943 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 TBC1D25Q3MII6 688 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 HS1BP3Q53T59 392 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 CT47A1Q5JQC4 288 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-212ENST00000597995 PIP5KL1Q5T9C9 394 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 Q6ZVU0 165 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 GPR155Q7Z3F1 870 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 SLC47A2Q86VL8 602 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 PASD1Q8IV76 773 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 FAM114A1Q8IWE2 563 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 FAM71AQ8IYT1 594 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 TMIEQ8NEW7 156 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 OR52K2Q8NGK3 314 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 OR4C6Q8NH72 309 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 FAM174AQ8TBP5 190 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 IFT43Q96FT9 208 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 PPP1R13BQ96KQ4 1090 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 CCDC114Q96M63 670 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 NAA15Q9BXJ9 866 aaKnown RBP12.83□□□□□ -0.36
TRIM28-212ENST00000597995 DACH1Q9UI36 760 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 VPS28Q9UK41 221 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 VANGL2Q9ULK5 521 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 PCDHGC3Q9UN70 934 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 HS3ST2Q9Y278 367 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 FHOD1Q9Y613 1164 aa12.83□□□□□ -0.36
TRIM28-212ENST00000597995 KALRNO60229 2985 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 SLC31A1O15431 190 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 C1QL1O75973 258 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 PRB1P04280 392 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 THEGLP0DJG4 465 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 SRCP12931 536 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 CHRNA3P32297 505 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 SNX16P57768 344 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 DAB2P98082 770 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 TLE3Q04726 772 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 POM121L1PQ3SYA9 428 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 TCP11X2Q5H9J9 407 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 KLHDC7AQ5VTJ3 777 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 CDKAL1Q5VV42 579 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 C11orf57Q6ZUT1 292 aaPredicted RBP12.82□□□□□ -0.36
TRIM28-212ENST00000597995 HORMAD1Q86X24 394 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 ERICH1Q86X53 443 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 LSMEM2Q8N112 164 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 ENOX1Q8TC92 643 aaKnown RBP12.82□□□□□ -0.36
TRIM28-212ENST00000597995 PLCB1Q9NQ66 1216 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 TMEM51Q9NW97 253 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 CA5BQ9Y2D0 317 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 HS3ST4Q9Y661 456 aa12.82□□□□□ -0.36
TRIM28-212ENST00000597995 SYNJ2BP-COX16A0A087WUM0 186 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 A0A1W2PQU0 124 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 PAGE1O75459 146 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 PRNPP04156 253 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 ERBB2P04626 1255 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 GP1BAP07359 652 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 CTSLP07711 333 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 ALPPL2P10696 532 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 CKMT1AP12532 417 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 HNRNPA2B1P22626 353 aaKnown RBP12.81□□□□□ -0.36
TRIM28-212ENST00000597995 AKT2P31751 481 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 NOS2P35228 1153 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 IRAK1P51617 712 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 CLCN6P51797 869 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 NME3Q13232 169 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 DRAP1Q14919 205 aaPredicted RBP12.81□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF284Q2VY69 593 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 PTPN20Q4JDL3 420 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 CDCP2Q5VXM1 449 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 OLFML1Q6UWY5 402 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 KDM7AQ6ZMT4 941 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 ABI3BPQ7Z7G0 1075 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 SETD3Q86TU7 594 aaPredicted RBP12.81□□□□□ -0.36
TRIM28-212ENST00000597995 DCP2Q8IU60 420 aaKnown RBP12.81□□□□□ -0.36
TRIM28-212ENST00000597995 SPACA3Q8IXA5 215 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 C1orf131Q8NDD1 294 aaKnown RBP12.81□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF248Q8NDW4 579 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 OR2A12Q8NGT7 310 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF578Q96N58 590 aaPredicted RBP12.81□□□□□ -0.36
TRIM28-212ENST00000597995 NOX5Q96PH1 765 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 GBP4Q96PP9 640 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 PSMB7Q99436 277 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 C2orf49Q9BVC5 232 aaPredicted RBP12.81□□□□□ -0.36
TRIM28-212ENST00000597995 MUC3BQ9H195 1237 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 USP29Q9HBJ7 922 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 DYRK4Q9NR20 520 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 EVA1BQ9NVM1 165 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 UCKL1Q9NWZ5 548 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 TAB2Q9NYJ8 693 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 RRN3Q9NYV6 651 aa12.81□□□□□ -0.36
TRIM28-212ENST00000597995 COX16Q9P0S2 106 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms