RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 MIIPQ5JXC2 388 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 FAM102AQ5T9C2 384 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-211ENST00000597968 KLHDC7AQ5VTJ3 777 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 OTUD1Q5VV17 481 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-211ENST00000597968 DPY19L2P1Q6NXN4 242 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 DHRS13Q6UX07 377 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 KANSL1Q7Z3B3 1105 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 XYLT1Q86Y38 959 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 GATAD2AQ86YP4 633 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 NBEAQ8NFP9 2946 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 OR52K2Q8NGK3 314 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 OR2A12Q8NGT7 310 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 KLHDC7BQ96G42 594 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 NAA15Q9BXJ9 866 aaKnown RBP13.94□□□□□ -0.18
TRIM28-211ENST00000597968 STK33Q9BYT3 514 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 NRSN2Q9GZP1 204 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 PLCB1Q9NQ66 1216 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 VPS51Q9UID3 782 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 ANKRD11Q6UB99 2663 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-211ENST00000597968 PLXNA2O75051 1894 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 LOC400499M0QZD8 3231 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 WNT9AO14904 365 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 JUPP14923 745 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 UCHL3P15374 230 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 HNRNPA2B1P22626 353 aaKnown RBP13.93□□□□□ -0.18
TRIM28-211ENST00000597968 ACP1P24666 158 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 OR1E1P30953 314 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 AKT2P31751 481 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 GEMIN4P57678 1058 aaKnown RBP13.93□□□□□ -0.18
TRIM28-211ENST00000597968 E2F1Q01094 437 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 NRG1Q02297 640 aaPredicted RBP13.93□□□□□ -0.18
TRIM28-211ENST00000597968 ZNF211Q13398 564 aaPredicted RBP13.93□□□□□ -0.18
TRIM28-211ENST00000597968 PIP5KL1Q5T9C9 394 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 C14orf80Q86SX3 495 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 HORMAD1Q86X24 394 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 PCDH20Q8N6Y1 951 aaKnown RBP13.93□□□□□ -0.18
TRIM28-211ENST00000597968 ISG20Q96AZ6 181 aaKnown RBP13.93□□□□□ -0.18
TRIM28-211ENST00000597968 LRIG1Q96JA1 1093 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 PSMB7Q99436 277 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 ZYG11BQ9C0D3 744 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 CLSTN2Q9H4D0 955 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 USP29Q9HBJ7 922 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 KLHL11Q9NVR0 708 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 TMEM59LQ9UK28 342 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 TMEM131Q92545 1883 aa13.93□□□□□ -0.18
TRIM28-211ENST00000597968 NYNRINQ9P2P1 1898 aaKnown RBP13.93□□□□□ -0.18
TRIM28-211ENST00000597968 AP1G1O43747 822 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 CNTN5O94779 1100 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 IRAK1P51617 712 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 TAS2R38P59533 333 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 CYP4F3Q08477 520 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 KCNMA1Q12791 1236 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 RAPGEF1Q13905 1077 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 RTP5Q14D33 572 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 ARL13BQ3SXY8 428 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 ALFQ53S48 1182 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 KIAA1161Q6NSJ0 714 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 FBXL19Q6PCT2 694 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 ERN2Q76MJ5 926 aaKnown RBP13.92□□□□□ -0.18
TRIM28-211ENST00000597968 SPATS2Q86XZ4 545 aaKnown RBP13.92□□□□□ -0.18
TRIM28-211ENST00000597968 EID2Q8N6I1 236 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 TBCBQ99426 244 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 EVA1BQ9NVM1 165 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 IL36AQ9UHA7 158 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 AJAP1Q9UKB5 411 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-211ENST00000597968 RALYQ9UKM9 306 aaKnown RBP13.92□□□□□ -0.18
TRIM28-211ENST00000597968 RAXQ9Y2V3 346 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 HS3ST3A1Q9Y663 406 aa13.92□□□□□ -0.18
TRIM28-211ENST00000597968 KNL1Q8NG31 2342 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 ITPR1Q14643 2758 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 NEMP2A6NFY4 417 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 F8VZ95 297 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 KPNA3O00505 521 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-211ENST00000597968 MT-CO1P00395 513 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 CTSLP07711 333 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 THEGLP0DJG4 465 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 ALPPL2P10696 532 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 MAT2AP31153 395 aaKnown RBP13.91□□□□□ -0.18
TRIM28-211ENST00000597968 MAPKAPK2P49137 400 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 SERPINH1P50454 418 aaKnown RBP13.91□□□□□ -0.18
TRIM28-211ENST00000597968 NEK3P51956 506 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 METAP1P53582 386 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 RNASE9P60153 205 aaKnown RBP13.91□□□□□ -0.18
TRIM28-211ENST00000597968 RPS21P63220 83 aaKnown RBP13.91□□□□□ -0.18
TRIM28-211ENST00000597968 BNIP3Q12983 259 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 PROX2Q3B8N5 592 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 PRAMEF14Q5SWL7 426 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 C22orf39Q6P5X5 142 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 TRIM72Q6ZMU5 477 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 ABI3BPQ7Z7G0 1075 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 PDZD3Q86UT5 571 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 EPS8L1Q8TE68 723 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 ASB12Q8WXK4 309 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 RAB7BQ96AH8 199 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 DUSP23Q9BVJ7 150 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 ANLNQ9NQW6 1124 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 ZNF212Q9UDV6 495 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 FHOD1Q9Y613 1164 aa13.91□□□□□ -0.18
TRIM28-211ENST00000597968 A0A1W2PQU0 124 aa13.9□□□□□ -0.18
TRIM28-211ENST00000597968 I6L893 689 aaPredicted RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms