RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GRTP1Q5TC63 336 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 SLC26A9Q7LBE3 791 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 OTOP3Q7RTS5 596 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 DENND6AQ8IWF6 608 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 ANKRD52Q8NB46 1076 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 SPATA22Q8NHS9 363 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 PRDM16Q9HAZ2 1276 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 PIGVQ9NUD9 493 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 ZDHHC2Q9UIJ5 367 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 ANKRD33BA6NCL7 494 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 SOCS7O14512 581 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 SPTLC1O15269 473 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 IGFBP6P24592 240 aaPredicted RBP15.53■□□□□ 0.08
UPF1-204ENST00000596842 ITGA7Q13683 1181 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 DGKDQ16760 1214 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 TIFABQ6ZNK6 161 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 ARMCX2Q7L311 632 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 PCDHAC1Q9H158 963 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 TRPV6Q9H1D0 765 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 RNF39Q9H2S5 420 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 MKS1Q9NXB0 559 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 ARHGEF38Q9NXL2 777 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 DPYSL4O14531 572 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 MGAMO43451 1857 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 VAPBO95292 243 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 THRAP10827 490 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 TFEBP19484 476 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 MATKP42679 507 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 PRAMEP78395 509 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 MS4A2Q01362 244 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 RALGDSQ12967 914 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 GEN1Q17RS7 908 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 C4orf22Q6V702 233 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 WDR41Q9HAD4 459 aa15.53■□□□□ 0.08
UPF1-204ENST00000596842 ATP6AP2A0A1C7CYW4 349 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 ATP6AP2O75787 350 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 TKTL1P51854 596 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 CCDC153Q494R4 210 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 MAP3K21Q5TCX8 1036 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 GK5Q6ZS86 529 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 ZNF354CQ86Y25 554 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 LRRC43Q8N309 656 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 MAF1Q9H063 256 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 RBMX2Q9Y388 322 aaKnown RBP15.52■□□□□ 0.08
UPF1-204ENST00000596842 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.52■□□□□ 0.08
UPF1-204ENST00000596842 TPST1O60507 370 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 MPP1Q00013 466 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 PCSK7Q16549 785 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 EPGNQ6UW88 154 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 FTHL17Q9BXU8 183 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 CCDC167Q9P0B6 97 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 XPR1Q9UBH6 696 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 FZD10Q9ULW2 581 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 GNEQ9Y223 722 aaKnown RBP15.52■□□□□ 0.08
UPF1-204ENST00000596842 CDYLQ9Y232 598 aa15.52■□□□□ 0.08
UPF1-204ENST00000596842 A0A1B0GTW7 788 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 PMPCBO75439 489 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 MT-CYBP00156 380 aaPredicted RBP15.52■□□□□ 0.07
UPF1-204ENST00000596842 MAGEA6P43360 314 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 PTPN9P43378 593 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 LIMK2P53671 638 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 MTTPP55157 894 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 R3HDM1Q15032 1099 aaKnown RBP15.52■□□□□ 0.07
UPF1-204ENST00000596842 PAN2Q504Q3 1202 aaKnown RBP15.52■□□□□ 0.07
UPF1-204ENST00000596842 C1QTNF12Q5T7M4 302 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 AMIGO2Q86SJ2 522 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 PHF21BQ96EK2 531 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 Q9H521 79 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 ZNF408Q9H9D4 720 aa15.52■□□□□ 0.07
UPF1-204ENST00000596842 USP17L7P0C7H9 530 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 IMPDH2P12268 514 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 PTPN3P26045 913 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 RPL14P50914 215 aaKnown RBP15.51■□□□□ 0.07
UPF1-204ENST00000596842 SLC12A2P55011 1212 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 ZBTB46Q86UZ6 589 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 PSTKQ8IV42 348 aaKnown RBP15.51■□□□□ 0.07
UPF1-204ENST00000596842 RYBPQ8N488 228 aaPredicted RBP15.51■□□□□ 0.07
UPF1-204ENST00000596842 DIS3LQ8TF46 1054 aaKnown RBP15.51■□□□□ 0.07
UPF1-204ENST00000596842 MRPL1Q9BYD6 325 aaKnown RBP15.51■□□□□ 0.07
UPF1-204ENST00000596842 FAM96AQ9H5X1 160 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 PFDN4Q9NQP4 134 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 STAP1Q9ULZ2 295 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 FER1L6Q2WGJ9 1857 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 C9JVG2 144 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 ZNF195O14628 629 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 CRTAMO95727 393 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 GJA8P48165 433 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 GRIK4Q16099 956 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 PITRM1Q5JRX3 1037 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 SPANXN3Q5MJ09 141 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 C9orf57Q5W0N0 161 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 PGM2L1Q6PCE3 622 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 POTEAQ6S8J7 498 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 RNF169Q8NCN4 708 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 ATP6V1E2Q96A05 226 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 ULBP1Q9BZM6 244 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 CAAP1Q9H8G2 361 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 ATXN10Q9UBB4 475 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 RBPJLQ9UBG7 517 aa15.51■□□□□ 0.07
UPF1-204ENST00000596842 NUDT5Q9UKK9 219 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms