RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CAPN11Q9UMQ6 739 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 CA5BQ9Y2D0 317 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 SNX10Q9Y5X0 201 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 HS3ST4Q9Y661 456 aa12.83□□□□□ -0.36
UPF1-203ENST00000594504 A0A1B0GVM2 712 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 TCAF2A6NFQ2 919 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 RNF103O00237 685 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 ENC1O14682 589 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 DAB1O75553 588 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 CNTN5O94779 1100 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 LDOC1O95751 146 aaPredicted RBP12.82□□□□□ -0.36
UPF1-203ENST00000594504 ADH1BP00325 375 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 GYPCP04921 128 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 TFE3P19532 575 aaPredicted RBP12.82□□□□□ -0.36
UPF1-203ENST00000594504 CCR1P32246 355 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 KLHL30Q0D2K2 578 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 SLC12A1Q13621 1099 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 TRIM14Q14142 442 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 E4F1Q66K89 784 aaPredicted RBP12.82□□□□□ -0.36
UPF1-203ENST00000594504 PPP1R2P3Q6NXS1 205 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 SPATS2Q86XZ4 545 aaKnown RBP12.82□□□□□ -0.36
UPF1-203ENST00000594504 GALNT15Q8N3T1 639 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 CNDP2Q96KP4 475 aaKnown RBP12.82□□□□□ -0.36
UPF1-203ENST00000594504 FEM1AQ9BSK4 669 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 SIK2Q9H0K1 926 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 CAAP1Q9H8G2 361 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 ANLNQ9NQW6 1124 aa12.82□□□□□ -0.36
UPF1-203ENST00000594504 LUC7L2Q9Y383 392 aaKnown RBP12.82□□□□□ -0.36
UPF1-203ENST00000594504 SPEGQ15772 3267 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 I6L893 689 aaPredicted RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 M0QYT0 321 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 TLR4O00206 839 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 DFNA5O60443 496 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 PAGE1O75459 146 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 MT-CO1P00395 513 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 CALB1P05937 261 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 TNFAIP3P21580 790 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 NXPH1P58417 271 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 RNASE9P60153 205 aaKnown RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 SULT2A1Q06520 285 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 CNTN1Q12860 1018 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 ZNF177Q13360 481 aaPredicted RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 ELAVL3Q14576 367 aaKnown RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 DLG2Q15700 870 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 SMAD1Q15797 465 aaKnown RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 C2CD6Q53TS8 623 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 RABGAP1LQ5R372 815 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 FAM102AQ5T9C2 384 aaPredicted RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 OTUD1Q5VV17 481 aaPredicted RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 Q6ZVU0 165 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 PRPF39Q86UA1 669 aaKnown RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 PDZD3Q86UT5 571 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 PHF13Q86YI8 300 aaPredicted RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 VSTM4Q8IW00 320 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 SLC30A5Q8TAD4 765 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 PIP4K2CQ8TBX8 421 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 CPLX3Q8WVH0 158 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 OR8D1Q8WZ84 308 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 KLK6Q92876 244 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 SKA1Q96BD8 255 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 CRELD1Q96HD1 420 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 C11orf70Q9BRQ4 267 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 RBSNQ9H1K0 784 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 HAUS4Q9H6D7 363 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 GDF3Q9NR23 364 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 TMPRSS4Q9NRS4 437 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 RRN3Q9NYV6 651 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 SLC25A13Q9UJS0 675 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 PPM1HQ9ULR3 514 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 OR51B4Q9Y5P0 310 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 BZW2Q9Y6E2 419 aaKnown RBP12.81□□□□□ -0.36
UPF1-203ENST00000594504 ASPMQ8IZT6 3477 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 AKAP13Q12802 2813 aa12.81□□□□□ -0.36
UPF1-203ENST00000594504 GOLGA8SH3BPF8 625 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 K7ERQ8 282 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 PLRG1O43660 514 aaKnown RBP12.8□□□□□ -0.36
UPF1-203ENST00000594504 ATP9BO43861 1147 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 SNAP91O60641 907 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 ADCY5O95622 1261 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 SLC2A3P11169 496 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 CASP14P31944 242 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 NOS2P35228 1153 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 GSCP56915 257 aaPredicted RBP12.8□□□□□ -0.36
UPF1-203ENST00000594504 C1QBPQ07021 282 aaKnown RBP12.8□□□□□ -0.36
UPF1-203ENST00000594504 PTP4A2Q12974 167 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 ALFQ53S48 1182 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 TDRD12Q587J7 1177 aaKnown RBP12.8□□□□□ -0.36
UPF1-203ENST00000594504 ACAD10Q6JQN1 1059 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 MON1BQ7L1V2 547 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 ARCQ7LC44 396 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 ZNF571Q7Z3V5 609 aaPredicted RBP12.8□□□□□ -0.36
UPF1-203ENST00000594504 GAS2L3Q86XJ1 694 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 FAM131CQ96AQ9 280 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 LRIG1Q96JA1 1093 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 PSMB7Q99436 277 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 TRIM5Q9C035 493 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 PIGVQ9NUD9 493 aa12.8□□□□□ -0.36
UPF1-203ENST00000594504 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.8□□□□□ -0.36
UPF1-203ENST00000594504 ADAM22Q9P0K1 906 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms