RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NDST2P52849 883 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 RPS14P62263 151 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 ARF5P84085 180 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 RPL6Q02878 288 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 SFSWAPQ12872 951 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 DPYSQ14117 519 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 LINGO4Q6UY18 593 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 Q6ZVU0 165 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 CACUL1Q86Y37 369 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 GPR161Q8N6U8 529 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 FRMD1Q8N878 549 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 HSPH1Q92598 858 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 CCDC114Q96M63 670 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 CEP44Q9C0F1 390 aa12.16□□□□□ -0.46
LIG3-213ENST00000590630 NOL6Q9H6R4 1146 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 CWC15Q9P013 229 aaKnown RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 RCOR3Q9P2K3 495 aaPredicted RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 FARP1Q9Y4F1 1045 aaPredicted RBP12.16□□□□□ -0.46
LIG3-213ENST00000590630 SPTBN4Q9H254 2564 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 SOWAHDA6NJG2 315 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 RASA4BC9J798 803 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 MCF2LO15068 1137 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 RASA4O43374 803 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 KDELR3O43731 214 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 NDUFS2O75306 463 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 EPN2O95208 641 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 NDUFA10O95299 355 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 ADH1BP00325 375 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 KRT7P08729 469 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 VAV1P15498 845 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 ERCC2P18074 760 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 SERINC3Q13530 473 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 CST6Q15828 149 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 TXNRD3NBQ6F5E7 133 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 C22orf39Q6P5X5 142 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 USP30Q70CQ3 517 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 POLNQ7Z5Q5 900 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 ZNF354CQ86Y25 554 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 MMAAQ8IVH4 418 aaKnown RBP12.15□□□□□ -0.46
LIG3-213ENST00000590630 STK40Q8N2I9 435 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 LZTR1Q8N653 840 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 OR8D1Q8WZ84 308 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 TOE1Q96GM8 510 aaKnown RBP12.15□□□□□ -0.46
LIG3-213ENST00000590630 FAM129BQ96TA1 746 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 BAG1Q99933 345 aaPredicted RBP12.15□□□□□ -0.46
LIG3-213ENST00000590630 PABPC3Q9H361 631 aaKnown RBP12.15□□□□□ -0.46
LIG3-213ENST00000590630 LRRC19Q9H756 370 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 CD93Q9NPY3 652 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 WSB2Q9NYS7 404 aaPredicted RBP12.15□□□□□ -0.46
LIG3-213ENST00000590630 PCDHA13Q9Y5I0 950 aa12.15□□□□□ -0.46
LIG3-213ENST00000590630 EPN1Q9Y6I3 576 aaPredicted RBP12.15□□□□□ -0.46
LIG3-213ENST00000590630 CEP250Q9BV73 2442 aa12.15□□□□□ -0.47
LIG3-213ENST00000590630 SHROOM3Q8TF72 1996 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 CACNA1EQ15878 2313 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 A0A0A6YYK5 440 aaPredicted RBP12.14□□□□□ -0.47
LIG3-213ENST00000590630 K7ERQ8 282 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 SMAD6O43541 496 aaKnown RBP12.14□□□□□ -0.47
LIG3-213ENST00000590630 IL1BP01584 269 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 C5AR1P21730 350 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 DPP6P42658 865 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 RECQLP46063 649 aaPredicted RBP12.14□□□□□ -0.47
LIG3-213ENST00000590630 DHPSP49366 369 aaPredicted RBP12.14□□□□□ -0.47
LIG3-213ENST00000590630 HADHBP55084 474 aaKnown RBP12.14□□□□□ -0.47
LIG3-213ENST00000590630 KRT81Q14533 505 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 MESDQ14696 234 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 FAM46CQ5VWP2 391 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 TMEFF1Q8IYR6 380 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 PCDH20Q8N6Y1 951 aaKnown RBP12.14□□□□□ -0.47
LIG3-213ENST00000590630 SPC24Q8NBT2 197 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 CADM4Q8NFZ8 388 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 OR2A12Q8NGT7 310 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 FAM71BQ8TC56 605 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 CASKIN2Q8WXE0 1202 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 TSC1Q92574 1164 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 FOXJ1Q92949 421 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 ISG20Q96AZ6 181 aaKnown RBP12.14□□□□□ -0.47
LIG3-213ENST00000590630 HMCESQ96FZ2 354 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 CSPG4P5Q96PW8 444 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 PCED1AQ9H1Q7 454 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 PCDH18Q9HCL0 1135 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 FZD4Q9ULV1 537 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 NCKAP1Q9Y2A7 1128 aa12.14□□□□□ -0.47
LIG3-213ENST00000590630 BCLAF3A2AJT9 711 aaKnown RBP12.13□□□□□ -0.47
LIG3-213ENST00000590630 ARHGAP42A6NI28 874 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 TMEM110-MUSTN1A8MSY1 372 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 C1QTNF3-AMACRE9PGA6 284 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 MID1O15344 667 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 BUB1O43683 1085 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 BNIP3LO60238 219 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 FOXD2O60548 495 aaPredicted RBP12.13□□□□□ -0.47
LIG3-213ENST00000590630 ZNF821O75541 412 aaPredicted RBP12.13□□□□□ -0.47
LIG3-213ENST00000590630 CD160O95971 181 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 SLC8A1P32418 973 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 HOXD12P35452 270 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 MPLP40238 635 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 SLC1A1P43005 524 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 PTGER3P43115 390 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 PSMD8P48556 350 aa12.13□□□□□ -0.47
LIG3-213ENST00000590630 CDH6P55285 790 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms