RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 ZSWIM1Q9BR11 485 aa12.63□□□□□ -0.39
TOP3A-215ENST00000583328 TRIM4Q9C037 500 aa12.63□□□□□ -0.39
TOP3A-215ENST00000583328 DYRK4Q9NR20 520 aa12.63□□□□□ -0.39
TOP3A-215ENST00000583328 ST7Q9NRC1 585 aa12.63□□□□□ -0.39
TOP3A-215ENST00000583328 PCDHGA8Q9Y5G5 932 aa12.63□□□□□ -0.39
TOP3A-215ENST00000583328 TP53BP1Q12888 1972 aaPredicted RBP12.63□□□□□ -0.39
TOP3A-215ENST00000583328 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 A0A1W2PNU3 283 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 TCAF2A6NFQ2 919 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 RNF225M0QZC1 329 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 KPNA3O00505 521 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 LZTS3O60299 673 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 CALCAP01258 141 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 ACADSBP45954 432 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 SKOR1P84550 965 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 DPYDQ12882 1025 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 ZNF177Q13360 481 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 ARL13BQ3SXY8 428 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 C6orf132Q5T0Z8 1188 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 TTC39BQ5VTQ0 682 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 ZCCHC8Q6NZY4 707 aaKnown RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 GUSBP11Q6P575 273 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 GCNT7Q6ZNI0 430 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 RBM44Q6ZP01 1051 aaKnown RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 PTAR1Q7Z6K3 402 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 DCP2Q8IU60 420 aaKnown RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 ELOA2Q8IYF1 753 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 SLC22A18ASQ8N1D0 253 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 FAM174AQ8TBP5 190 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 ARRDC3Q96B67 414 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 PRR11Q96HE9 360 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 TRIM62Q9BVG3 475 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 IPO11Q9UI26 975 aaKnown RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 HOOK1Q9UJC3 728 aaKnown RBP12.62□□□□□ -0.39
TOP3A-215ENST00000583328 ENTPD2Q9Y5L3 495 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 HS3ST3A1Q9Y663 406 aa12.62□□□□□ -0.39
TOP3A-215ENST00000583328 A6NNZ2 444 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 CDRT15L2A8MXV6 281 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 KCNU1A8MYU2 1149 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 H3BM21 787 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 TNFSF15O95150 251 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 TRUB2O95900 331 aaKnown RBP12.61□□□□□ -0.39
TOP3A-215ENST00000583328 CHRNA3P32297 505 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 CLN3Q13286 438 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 SEL1L3Q68CR1 1132 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 OR6B2Q6IFH4 312 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 CXorf57Q6NSI4 855 aaKnown RBP12.61□□□□□ -0.39
TOP3A-215ENST00000583328 CRTC1Q6UUV9 634 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 BEND5Q7L4P6 421 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 ABI3BPQ7Z7G0 1075 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 SH2D3CQ8N5H7 860 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 EXD3Q8N9H8 876 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 WDR36Q8NI36 951 aaKnown RBP12.61□□□□□ -0.39
TOP3A-215ENST00000583328 ALG14Q96F25 216 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 CCDC114Q96M63 670 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 RPRD1AQ96P16 312 aaPredicted RBP12.61□□□□□ -0.39
TOP3A-215ENST00000583328 CCNL2Q96S94 520 aaPredicted RBP12.61□□□□□ -0.39
TOP3A-215ENST00000583328 FEM1AQ9BSK4 669 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 NCKIPSDQ9NZQ3 722 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 VPS28Q9UK41 221 aa12.61□□□□□ -0.39
TOP3A-215ENST00000583328 ZFR2Q9UPR6 939 aaKnown RBP12.61□□□□□ -0.39
TOP3A-215ENST00000583328 EME2A4GXA9 379 aaPredicted RBP12.6□□□□□ -0.39
TOP3A-215ENST00000583328 GJB6O95452 261 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 CSF2P04141 144 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 CTSLP07711 333 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 SRSF1Q07955 248 aaKnown RBP eCLIP12.6□□□□□ -0.39
TOP3A-215ENST00000583328 MAPK8IP2Q13387 824 aaPredicted RBP12.6□□□□□ -0.39
TOP3A-215ENST00000583328 NR0B2Q15466 257 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 FBXL22Q6P050 247 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 XKR5Q6UX68 686 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 ERN2Q76MJ5 926 aaKnown RBP12.6□□□□□ -0.39
TOP3A-215ENST00000583328 SMYD4Q8IYR2 804 aaPredicted RBP12.6□□□□□ -0.39
TOP3A-215ENST00000583328 ATP11CQ8NB49 1132 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 ZNF548Q8NEK5 533 aaPredicted RBP12.6□□□□□ -0.39
TOP3A-215ENST00000583328 TMIEQ8NEW7 156 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 LMX1AQ8TE12 382 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 BMFQ96LC9 184 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 NT5C1BQ96P26 610 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 TSG101Q99816 390 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 PRMT1Q99873 361 aaKnown RBP12.6□□□□□ -0.39
TOP3A-215ENST00000583328 ARHGAP9Q9BRR9 750 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 POPDC2Q9HBU9 364 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 SALL4Q9UJQ4 1053 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 CSNK1G3Q9Y6M4 447 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 ATMQ13315 3056 aa12.6□□□□□ -0.39
TOP3A-215ENST00000583328 SYNJ2BP-COX16A0A087WUM0 186 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 PMS2P1A4D2B8 440 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 RIOK3O14730 519 aaKnown RBP12.59□□□□□ -0.39
TOP3A-215ENST00000583328 MUSKO15146 869 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 SLC16A3O15427 465 aaKnown RBP12.59□□□□□ -0.39
TOP3A-215ENST00000583328 AQP9O43315 295 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 TCEA3O75764 348 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 MBD3O95983 291 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 PAK4O96013 591 aaPredicted RBP12.59□□□□□ -0.39
TOP3A-215ENST00000583328 PRNPP04156 253 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 SLC2A3P11169 496 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 SRCP12931 536 aa12.59□□□□□ -0.39
TOP3A-215ENST00000583328 NME1P15531 152 aaKnown RBP12.59□□□□□ -0.39
TOP3A-215ENST00000583328 MLLT3P42568 568 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms