RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 MON1BQ7L1V2 547 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 IRF2BP2Q7Z5L9 587 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 MMAAQ8IVH4 418 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 SLC41A1Q8IVJ1 513 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 OR8D1Q8WZ84 308 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SNX19Q92543 992 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 TRIM11Q96F44 468 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 ZNF419Q96HQ0 510 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 VCPIP1Q96JH7 1222 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 RPL10LQ96L21 214 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 MCEEQ96PE7 176 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 FEM1AQ9BSK4 669 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SPON2Q9BUD6 331 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 GTPBP2Q9BX10 602 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 MIR1-1HGQ9H1L0 117 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 PCED1AQ9H1Q7 454 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 RSPH9Q9H1X1 276 aaPredicted RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 PABPC3Q9H361 631 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 HAUS4Q9H6D7 363 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 RETREG1Q9H6L5 497 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SGK2Q9HBY8 427 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 CD93Q9NPY3 652 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 PARVAQ9NVD7 372 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 AIPL1Q9NZN9 384 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 PPARGC1AQ9UBK2 798 aaKnown RBP8.31□□□□□ -1.08
VPS53-214ENST00000572607 SLCO3A1Q9UIG8 710 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SLC6A14Q9UN76 642 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 WASF3Q9UPY6 502 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 TBC1D30Q9Y2I9 924 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 SNX10Q9Y5X0 201 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 LOC400499M0QZD8 3231 aa8.31□□□□□ -1.08
VPS53-214ENST00000572607 LAMA5O15230 3695 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 IGLV3-10A0A075B6K4 115 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 A0A1B0GTW7 788 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 A0A1W2PQJ5 194 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ILVBLA1L0T0 632 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 LRRC72A6NJI9 287 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 C4orf47A7E2U8 309 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 METTL12A8MUP2 240 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 PATE3B3GLJ2 98 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 C1QTNF3-AMACRE9PGA6 284 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 CCP110O43303 1012 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 CBFA2T2O43439 604 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 BNIP3LO60238 219 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 RNASEH2AO75792 299 aaKnown RBP8.3□□□□□ -1.08
VPS53-214ENST00000572607 SEMA4FO95754 770 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 IL1BP01584 269 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 SERPINF2P08697 491 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ENGP17813 658 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 C5AR1P21730 350 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ADRA1BP35368 520 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 PRKCIP41743 596 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 MAPK8P45983 427 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 RECQLP46063 649 aaPredicted RBP8.3□□□□□ -1.08
VPS53-214ENST00000572607 NUMBP49757 651 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 IRAK1P51617 712 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ZNF143P52747 638 aaPredicted RBP8.3□□□□□ -1.08
VPS53-214ENST00000572607 AIF1P55008 147 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 HDAC4P56524 1084 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 IRX4P78413 519 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 UAP1L1Q3KQV9 507 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 C9orf64Q5T6V5 341 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 FAM46CQ5VWP2 391 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 RETSATQ6NUM9 610 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 WDR59Q6PJI9 974 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 BNIPLQ7Z465 357 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 TFAP2DQ7Z6R9 452 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 SLFN11Q7Z7L1 901 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 MCOLN2Q8IZK6 566 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 HDDC3Q8N4P3 179 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ZCCHC9Q8N567 271 aaKnown RBP8.3□□□□□ -1.08
VPS53-214ENST00000572607 DCAF4L2Q8NA75 395 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ATP11CQ8NB49 1132 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 NTAN1Q96AB6 310 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 TBC1D31Q96DN5 1066 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 MYO19Q96H55 970 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 CNPY3Q9BT09 278 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS53-214ENST00000572607 OSBPL2Q9H1P3 480 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 MTG2Q9H4K7 406 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ATP13A1Q9HD20 1204 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 ANLNQ9NQW6 1124 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 TMEM74BQ9NUR3 256 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 FBXL12Q9NXK8 326 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 MPP6Q9NZW5 540 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 OR12D3Q9UGF7 316 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS53-214ENST00000572607 BZW2Q9Y6E2 419 aaKnown RBP8.3□□□□□ -1.08
VPS53-214ENST00000572607 SCINQ9Y6U3 715 aa8.3□□□□□ -1.08
VPS53-214ENST00000572607 PKD1L2Q7Z442 2459 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 DSPP15924 2871 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 TNRC6BQ9UPQ9 1833 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 A0A1W2PP55 124 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 FAM47DPA6NHR8 397 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 I6L893 689 aaPredicted RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 CBX4O00257 560 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 ALOX15BO15296 676 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 MID1O15344 667 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 ATP9BO43861 1147 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 OPHN1O60890 802 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms