RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 GNA12Q03113 381 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 SLC20A2Q08357 652 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 DPYSQ14117 519 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 IGSF10Q6WRI0 2623 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 METTL3Q86U44 580 aaKnown RBP21.08■□□□□ 0.97
VPS53-210ENST00000571456 CIR1Q86X95 450 aaPredicted RBP21.08■□□□□ 0.97
VPS53-210ENST00000571456 KATNAL2Q8IYT4 538 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 DCAF4L2Q8NA75 395 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 GATA6Q92908 595 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 CIPCQ9C0C6 399 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 RBM12Q9NTZ6 932 aaKnown RBP21.08■□□□□ 0.97
VPS53-210ENST00000571456 AMFRQ9UKV5 643 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 ATG2BQ96BY7 2078 aa21.08■□□□□ 0.96
VPS53-210ENST00000571456 SMG1Q96Q15 3661 aaKnown RBP21.07■□□□□ 0.96
VPS53-210ENST00000571456 GRID2IPA4D2P6 1211 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 ZSCAN5CA6NGD5 496 aaPredicted RBP21.07■□□□□ 0.96
VPS53-210ENST00000571456 ERCC2P18074 760 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 KDELR1P24390 212 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 CTNNA2P26232 953 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 CTNNA1P35221 906 aaKnown RBP21.07■□□□□ 0.96
VPS53-210ENST00000571456 CSKP41240 450 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 ST8SIA6P61647 398 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 MESP2Q0VG99 397 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 ENPP2Q13822 863 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 FUT11Q495W5 492 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 RNF219Q5W0B1 726 aaPredicted RBP21.07■□□□□ 0.96
VPS53-210ENST00000571456 TXNRD3NBQ6F5E7 133 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 RETSATQ6NUM9 610 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 Q6ZS52 159 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 SYT13Q7L8C5 426 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 PEX26Q7Z412 305 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 TRIM58Q8NG06 486 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 GAB3Q8WWW8 586 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 ZCCHC14Q8WYQ9 949 aaKnown RBP21.07■□□□□ 0.96
VPS53-210ENST00000571456 FAF2Q96CS3 445 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 ALG14Q96F25 216 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 RBM41Q96IZ5 413 aaKnown RBP21.07■□□□□ 0.96
VPS53-210ENST00000571456 CSPG4P5Q96PW8 444 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 CALN1Q9BXU9 219 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 KCNF1Q9H3M0 494 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 SMOC1Q9H4F8 434 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 C2orf42Q9NWW7 574 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 MMP17Q9ULZ9 603 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 HPCAL4Q9UM19 191 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 GUCA1BQ9UMX6 200 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 SLC8A2Q9UPR5 921 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 PCDHGA5Q9Y5G8 931 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 OR51B4Q9Y5P0 310 aa21.07■□□□□ 0.96
VPS53-210ENST00000571456 NUP205Q92621 2012 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 NTSR1P30989 418 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 CETN2P41208 172 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 COPS2P61201 443 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 ECT2LQ008S8 904 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 DPYSL3Q14195 570 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 POLD3Q15054 466 aaPredicted RBP21.06■□□□□ 0.96
VPS53-210ENST00000571456 TMCO3Q6UWJ1 677 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 LRRC49Q8IUZ0 686 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 RCOR2Q8IZ40 523 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 UBL4BQ8N7F7 174 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 EXD1Q8NHP7 514 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 RPLP0P6Q8NHW5 317 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 MAGEB5Q9BZ81 275 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 SLC25A13Q9UJS0 675 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 INTS6Q9UL03 887 aaKnown RBP21.06■□□□□ 0.96
VPS53-210ENST00000571456 PCDHA3Q9Y5H8 950 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 EML5Q05BV3 1969 aa21.06■□□□□ 0.96
VPS53-210ENST00000571456 LRRD1A4D1F6 860 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 TAF4O00268 1085 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 PALMO75781 387 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 RPP40O75818 363 aaKnown RBP21.05■□□□□ 0.96
VPS53-210ENST00000571456 ZRANB2O95218 330 aaKnown RBP eCLIP21.05■□□□□ 0.96
VPS53-210ENST00000571456 ZFXP17010 805 aaPredicted RBP21.05■□□□□ 0.96
VPS53-210ENST00000571456 MSNP26038 577 aaKnown RBP21.05■□□□□ 0.96
VPS53-210ENST00000571456 MZF1P28698 734 aaPredicted RBP21.05■□□□□ 0.96
VPS53-210ENST00000571456 GJC1P36383 396 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 CLCN6P51797 869 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 TMEM215Q68D42 235 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 KBTBD6Q86V97 674 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 CHPFQ8IZ52 775 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 IL17RCQ8NAC3 791 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 GABRG3Q99928 467 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 ACE2Q9BYF1 805 aaPredicted RBP21.05■□□□□ 0.96
VPS53-210ENST00000571456 FBRSQ9HAH7 460 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 ATP13A1Q9HD20 1204 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 LZTFL1Q9NQ48 299 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 VPS45Q9NRW7 570 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 TRIM10Q9UDY6 481 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 SUN2Q9UH99 717 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 DNAI1Q9UI46 699 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 LAMA5O15230 3695 aa21.05■□□□□ 0.96
VPS53-210ENST00000571456 FREM2Q5SZK8 3169 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 ARHGAP42A6NI28 874 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 DCLK1O15075 740 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 TOP3BO95985 862 aaKnown RBP21.04■□□□□ 0.96
VPS53-210ENST00000571456 KRT1P04264 644 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 CHRM1P11229 460 aaPredicted RBP21.04■□□□□ 0.96
VPS53-210ENST00000571456 IL4RP24394 825 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 TIE1P35590 1138 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 MPLP40238 635 aa21.04■□□□□ 0.96
VPS53-210ENST00000571456 SEC13P55735 322 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms