RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 EEF1GP26641 437 aaKnown RBP16.47■□□□□ 0.23
CLN3-229ENST00000567963 EPHA8P29322 1005 aaPredicted RBP16.47■□□□□ 0.23
CLN3-229ENST00000567963 OR1E1P30953 314 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 CHRNA3P32297 505 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 RXRGP48443 463 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 TAS2R38P59533 333 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 BNIP3Q12983 259 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 CAMK2BQ13554 666 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 STAT4Q14765 748 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 CCDC157Q569K6 752 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 C6orf118Q5T5N4 469 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 TRNP1Q6NT89 227 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 DHRS13Q6UX07 377 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 ARCQ7LC44 396 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 TFAP2DQ7Z6R9 452 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 IQCHQ86VS3 1027 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 SPATS2Q86XZ4 545 aaKnown RBP16.47■□□□□ 0.23
CLN3-229ENST00000567963 DCAF4L2Q8NA75 395 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 TMIEQ8NEW7 156 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 EPS8L1Q8TE68 723 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 CFAP57Q96MR6 1250 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 HAPLN3Q96S86 360 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 PREBQ9HCU5 417 aa16.47■□□□□ 0.23
CLN3-229ENST00000567963 ANKRD11Q6UB99 2663 aaPredicted RBP16.46■□□□□ 0.23
CLN3-229ENST00000567963 GOLGA4Q13439 2230 aaKnown RBP16.46■□□□□ 0.23
CLN3-229ENST00000567963 FAM149AA5PLN7 773 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 GOLGA8SH3BPF8 625 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 ENC1O14682 589 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 SMAD6O43541 496 aaKnown RBP16.46■□□□□ 0.23
CLN3-229ENST00000567963 MAGEC1O60732 1142 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 SRGAP2O75044 1071 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 LDOC1O95751 146 aaPredicted RBP16.46■□□□□ 0.23
CLN3-229ENST00000567963 RRM1P23921 792 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 CLCN6P51797 869 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 NOMO3P69849 1222 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 OVGP1Q12889 678 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 SETMARQ53H47 684 aaPredicted RBP16.46■□□□□ 0.23
CLN3-229ENST00000567963 PIP5KL1Q5T9C9 394 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 OXR1Q8N573 874 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 EID2Q8N6I1 236 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 MSANTD4Q8NCY6 345 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 CNDP2Q96KP4 475 aaKnown RBP16.46■□□□□ 0.23
CLN3-229ENST00000567963 CCDC114Q96M63 670 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 DKK4Q9UBT3 224 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 LHX6Q9UPM6 363 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 GPSM3Q9Y4H4 160 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 PCDHGA1Q9Y5H4 931 aa16.46■□□□□ 0.23
CLN3-229ENST00000567963 TRABD2BA6NFA1 517 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 PRAMEF26H0Y7S4 382 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 CBX4O00257 560 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 GLDCP23378 1020 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 CCDC15Q0P6D6 951 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 NAA35Q5VZE5 725 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 NEK5Q6P3R8 708 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 LINGO4Q6UY18 593 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 ZNF677Q86XU0 584 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 ZNF212Q9UDV6 495 aa16.45■□□□□ 0.22
CLN3-229ENST00000567963 ADAMTS20P59510 1910 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 ILVBLA1L0T0 632 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 RNF103O00237 685 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 KPNA3O00505 521 aaPredicted RBP16.44■□□□□ 0.22
CLN3-229ENST00000567963 RNGTTO60942 597 aaKnown RBP16.44■□□□□ 0.22
CLN3-229ENST00000567963 ENDOD1O94919 500 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 PRNPP04156 253 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 C1SP09871 688 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 DNAJC3Q13217 504 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 SFMBT2Q5VUG0 894 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 ZNF783Q6ZMS7 281 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 TMPRSS12Q86WS5 348 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 FAM131BQ86XD5 332 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 CHST14Q8NCH0 376 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 OR7D4Q8NG98 312 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 ENOX1Q8TC92 643 aaKnown RBP16.44■□□□□ 0.22
CLN3-229ENST00000567963 ARRDC3Q96B67 414 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 ZYG11BQ9C0D3 744 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 GANQ9H2C0 597 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 TAB2Q9NYJ8 693 aa16.44■□□□□ 0.22
CLN3-229ENST00000567963 NOCTQ9UK39 431 aaKnown RBP16.44■□□□□ 0.22
CLN3-229ENST00000567963 ZNF821O75541 412 aaPredicted RBP16.43■□□□□ 0.22
CLN3-229ENST00000567963 GFPT2O94808 682 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 CYP1A1P04798 512 aaPredicted RBP16.43■□□□□ 0.22
CLN3-229ENST00000567963 CDK4P11802 303 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 ARSIQ5FYB1 569 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 C22orf39Q6P5X5 142 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 DPY19L3Q6ZPD9 716 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 KANSL1Q7Z3B3 1105 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 EMC1Q8N766 993 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 PDCD7Q8N8D1 485 aaKnown RBP16.43■□□□□ 0.22
CLN3-229ENST00000567963 TMEM145Q8NBT3 493 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 SLC20A1Q8WUM9 679 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 TSC1Q92574 1164 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 KLHDC7BQ96G42 594 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 SPON2Q9BUD6 331 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 VPS16Q9H269 839 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 TNKS2Q9H2K2 1166 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 DYRK4Q9NR20 520 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 METTL5Q9NRN9 209 aaKnown RBP16.43■□□□□ 0.22
CLN3-229ENST00000567963 PPARGC1AQ9UBK2 798 aaKnown RBP16.43■□□□□ 0.22
CLN3-229ENST00000567963 IL36AQ9UHA7 158 aa16.43■□□□□ 0.22
CLN3-229ENST00000567963 CA5BQ9Y2D0 317 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms