RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 ERGIC2Q96RQ1 377 aa23.01■■□□□ 1.27
CLN3-215ENST00000565236 PCDHB18PQ96TA0 734 aa23.01■■□□□ 1.27
CLN3-215ENST00000565236 ADAM22Q9P0K1 906 aa23.01■■□□□ 1.27
CLN3-215ENST00000565236 DOCK4Q8N1I0 1966 aa23■■□□□ 1.27
CLN3-215ENST00000565236 CBX4O00257 560 aa23■■□□□ 1.27
CLN3-215ENST00000565236 PLRG1O43660 514 aaKnown RBP23■■□□□ 1.27
CLN3-215ENST00000565236 PCDHGA12O60330 932 aa23■■□□□ 1.27
CLN3-215ENST00000565236 KRT3P12035 628 aa23■■□□□ 1.27
CLN3-215ENST00000565236 RRM1P23921 792 aa23■■□□□ 1.27
CLN3-215ENST00000565236 CHRNA3P32297 505 aa23■■□□□ 1.27
CLN3-215ENST00000565236 ADRA1BP35368 520 aa23■■□□□ 1.27
CLN3-215ENST00000565236 CLCN6P51797 869 aa23■■□□□ 1.27
CLN3-215ENST00000565236 SLC45A4Q5BKX6 768 aa23■■□□□ 1.27
CLN3-215ENST00000565236 LINGO4Q6UY18 593 aa23■■□□□ 1.27
CLN3-215ENST00000565236 ZNF783Q6ZMS7 281 aa23■■□□□ 1.27
CLN3-215ENST00000565236 OR2A12Q8NGT7 310 aa23■■□□□ 1.27
CLN3-215ENST00000565236 JOSD2Q8TAC2 188 aa23■■□□□ 1.27
CLN3-215ENST00000565236 ADAMTS14Q8WXS8 1223 aa23■■□□□ 1.27
CLN3-215ENST00000565236 GATA6Q92908 595 aa23■■□□□ 1.27
CLN3-215ENST00000565236 SEPT11Q9NVA2 429 aaKnown RBP23■■□□□ 1.27
CLN3-215ENST00000565236 PPARGC1AQ9UBK2 798 aaKnown RBP23■■□□□ 1.27
CLN3-215ENST00000565236 OR12D3Q9UGF7 316 aa23■■□□□ 1.27
CLN3-215ENST00000565236 C2CD4BA6NLJ0 364 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 SMAD6O43541 496 aaKnown RBP22.99■■□□□ 1.27
CLN3-215ENST00000565236 LATO43561 262 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 WNT1P04628 370 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 GRK6P43250 576 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 PTPN9P43378 593 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 RECQLP46063 649 aaPredicted RBP22.99■■□□□ 1.27
CLN3-215ENST00000565236 PPP2CBP62714 309 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 PPP2CAP67775 309 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 CCDC15Q0P6D6 951 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 NCAPHQ15003 741 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 CLEC16AQ2KHT3 1053 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 RAB6CQ53S08 254 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 ARTNQ5T4W7 220 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 AGBL4Q5VU57 503 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 RETSATQ6NUM9 610 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 SLCO6A1Q86UG4 719 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 DRC7Q8IY82 874 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 BAHD1Q8TBE0 780 aaPredicted RBP22.99■■□□□ 1.27
CLN3-215ENST00000565236 SELENOOQ9BVL4 669 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 TMEM121BQ9BXQ6 578 aaPredicted RBP22.99■■□□□ 1.27
CLN3-215ENST00000565236 NAT10Q9H0A0 1025 aaKnown RBP22.99■■□□□ 1.27
CLN3-215ENST00000565236 RAB6CQ9H0N0 254 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 ATP13A1Q9HD20 1204 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 BTBD3Q9Y2F9 522 aa22.99■■□□□ 1.27
CLN3-215ENST00000565236 TMEM8BA6NDV4 472 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 KPNA3O00505 521 aaPredicted RBP22.98■■□□□ 1.27
CLN3-215ENST00000565236 WNT9AO14904 365 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 GJB6O95452 261 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 CALB1P05937 261 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 GLDCP23378 1020 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 MAT2AP31153 395 aaKnown RBP22.98■■□□□ 1.27
CLN3-215ENST00000565236 NUDT1P36639 197 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 IL9RQ01113 521 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 GNA12Q03113 381 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 TYRO3Q06418 890 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 SLC20A2Q08357 652 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 PTP4A2Q12974 167 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 PRAMEF14Q5SWL7 426 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 NAPEPLDQ6IQ20 393 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 RWDD4Q6NW29 188 aaKnown RBP22.98■■□□□ 1.27
CLN3-215ENST00000565236 STRADAQ7RTN6 431 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 PHF13Q86YI8 300 aaPredicted RBP22.98■■□□□ 1.27
CLN3-215ENST00000565236 AOPEPQ8N6M6 819 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 KDF1Q8NAX2 398 aaPredicted RBP22.98■■□□□ 1.27
CLN3-215ENST00000565236 TMIEQ8NEW7 156 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 ELF4Q99607 663 aaPredicted RBP22.98■■□□□ 1.27
CLN3-215ENST00000565236 OSBPL2Q9H1P3 480 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 GDF3Q9NR23 364 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 ZNF212Q9UDV6 495 aa22.98■■□□□ 1.27
CLN3-215ENST00000565236 IGF2RP11717 2491 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 A0A1B0GTQ1 180 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 A0A1W2PR77 199 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 FAM221BA6H8Z2 402 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 TLR4O00206 839 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 PRNPP04156 253 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 CTSLP07711 333 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 CCDC172P0C7W6 258 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 RFC1P35251 1148 aaPredicted RBP22.97■■□□□ 1.27
CLN3-215ENST00000565236 NRG1Q02297 640 aaPredicted RBP22.97■■□□□ 1.27
CLN3-215ENST00000565236 INAVAQ3KP66 663 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 C22orf39Q6P5X5 142 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 APTXQ7Z2E3 356 aaKnown RBP22.97■■□□□ 1.27
CLN3-215ENST00000565236 CENPIQ92674 756 aaPredicted RBP22.97■■□□□ 1.27
CLN3-215ENST00000565236 AGPAT1Q99943 283 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 HSD3B7Q9H2F3 369 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 TNKS2Q9H2K2 1166 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 DYRK4Q9NR20 520 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 ARHGAP20Q9P2F6 1191 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 DMTF1Q9Y222 760 aa22.97■■□□□ 1.27
CLN3-215ENST00000565236 ATXN1LP0C7T5 689 aaKnown RBP22.96■■□□□ 1.27
CLN3-215ENST00000565236 ATP1A3P13637 1013 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 ETFBP38117 255 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 SETMARQ53H47 684 aaPredicted RBP22.96■■□□□ 1.27
CLN3-215ENST00000565236 WDR59Q6PJI9 974 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 TRIM69Q86WT6 500 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 MFSD2AQ8NA29 543 aa22.96■■□□□ 1.27
CLN3-215ENST00000565236 CHST14Q8NCH0 376 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms