RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 RPIAP49247 311 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 MXI1P50539 228 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 OXCT1P55809 520 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 YWHAEP62258 255 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 SRSF6Q13247 344 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 FZD2Q14332 565 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 C4orf17Q53FE4 359 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 ZC3H12AQ5D1E8 599 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 PERM1Q5SV97 790 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 PIP5KL1Q5T9C9 394 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 PMF1Q6P1K2 205 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 GCNT7Q6ZNI0 430 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 ABI3BPQ7Z7G0 1075 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 CIR1Q86X95 450 aaPredicted RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 CCAR2Q8N163 923 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 SLC22A18ASQ8N1D0 253 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 FBXO39Q8N4B4 442 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 ZSCAN1Q8NBB4 408 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 WDR48Q8TAF3 677 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 FAM174AQ8TBP5 190 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 DQX1Q8TE96 717 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 CLEC4CQ8WTT0 213 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 ERCC4Q92889 916 aaPredicted RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 GLMNQ92990 594 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 NAT6Q93015 286 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 FAM149B1Q96BN6 582 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 EEF2KMTQ96G04 330 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 SEMA3CQ99985 751 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 MIS12Q9H081 205 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 EPB41L5Q9HCM4 733 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 SEPT10Q9P0V9 454 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 SERTAD1Q9UHV2 236 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 XPO7Q9UIA9 1087 aaKnown RBP7.52□□□□□ -1.21
VPS4A-203ENST00000564399 SALL4Q9UJQ4 1053 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 NAALADL1Q9UQQ1 740 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 MTMR6Q9Y217 621 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 TRAF3IP3Q9Y228 551 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 CSNK1G3Q9Y6M4 447 aa7.52□□□□□ -1.21
VPS4A-203ENST00000564399 SPTY2D1-AS1A0A0U1RR47 76 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 POM121BA6NF01 834 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 M0QYV0 167 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 O00370 1275 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 ATP9BO43861 1147 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 STX10O60499 249 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 GABBR2O75899 941 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 FBXO21O94952 628 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 YEATS4O95619 227 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 CSF2P04141 144 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 NME1P15531 152 aaKnown RBP7.51□□□□□ -1.21
VPS4A-203ENST00000564399 JUNDP17535 347 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 CHRNA3P32297 505 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 UGT1A5P35504 534 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 PLK1P53350 603 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 NNTQ13423 1086 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 ADAM9Q13443 819 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 CUL2Q13617 745 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 CUL4AQ13619 759 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 PDE1CQ14123 709 aaPredicted RBP7.51□□□□□ -1.21
VPS4A-203ENST00000564399 TBR1Q16650 682 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 C8orf34Q49A92 452 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 RABGAP1LQ5R372 815 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 MANEAQ5SRI9 462 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 SEL1L3Q68CR1 1132 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 LCLAT1Q6UWP7 414 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 RAB11FIP2Q7L804 512 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 TAC4Q86UU9 113 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 PARGQ86W56 976 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 PTRH1Q86Y79 214 aaKnown RBP7.51□□□□□ -1.21
VPS4A-203ENST00000564399 ATP6V0D2Q8N8Y2 350 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 SLC35F5Q8WV83 523 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 LIN37Q96GY3 246 aaPredicted RBP7.51□□□□□ -1.21
VPS4A-203ENST00000564399 SLC39A13Q96H72 371 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 BTN2A3PQ96KV6 586 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 BMFQ96LC9 184 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 CCDC114Q96M63 670 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 CCDC3Q9BQI4 270 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 SLC17A9Q9BYT1 436 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 STRADBQ9C0K7 418 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 SLC25A18Q9H1K4 315 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 UPF2Q9HAU5 1272 aaKnown RBP7.51□□□□□ -1.21
VPS4A-203ENST00000564399 SPASTQ9UBP0 616 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 SLC12A6Q9UHW9 1150 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 VPS28Q9UK41 221 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 KIAA1257Q9ULG3 409 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 ZFR2Q9UPR6 939 aaKnown RBP7.51□□□□□ -1.21
VPS4A-203ENST00000564399 MAPK8IP1Q9UQF2 711 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 PCDHGA7Q9Y5G6 932 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 HS3ST3A1Q9Y663 406 aa7.51□□□□□ -1.21
VPS4A-203ENST00000564399 ARHGEF17Q96PE2 2063 aaPredicted RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 TCAF2A6NFQ2 919 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 TMX2-CTNND1H3BSU7 103 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 AGRPO00253 132 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 FPGTO14772 594 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 TPP1O14773 563 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 CASC3O15234 703 aaKnown RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 NOBOXO60393 691 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PAK4O96013 591 aaPredicted RBP7.5□□□□□ -1.21
VPS4A-203ENST00000564399 PRNPP04156 253 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 FYNP06241 537 aa7.5□□□□□ -1.21
VPS4A-203ENST00000564399 CTSLP07711 333 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms