RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 PFDN4Q9NQP4 134 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 SIRT3Q9NTG7 399 aaPredicted RBP5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 SIDT1Q9NXL6 827 aaKnown RBP5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 EHD2Q9NZN4 543 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 KCND2Q9NZV8 630 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 PADI1Q9ULC6 663 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 LIPT1Q9Y234 373 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 HPSEQ9Y251 543 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 GDAQ9Y2T3 454 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 MAP3K2Q9Y2U5 619 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 SIT1Q9Y3P8 196 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 NEU2Q9Y3R4 380 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 BRWD3Q6RI45 1802 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 ZNF521Q96K83 1311 aa5.41□□□□□ -1.54
VPS35P1-201ENST00000563400 RGPD2P0DJD1 1756 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 IBTKQ9P2D0 1353 aaPredicted RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 TMEM265A0A087WTH1 108 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 RNF103-CHMP3A0A140T963 221 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 LOC102723971A0A1B0GUV8 181 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 LINC00854A0A1B0GVQ3 168 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 TCRBV5S2A0A599 114 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 CLRN2A0PK11 232 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 SMIM30A4D0T7 59 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 OR2W5A6NFC9 320 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 RNF103O00237 685 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 BCAT2O15382 392 aaPredicted RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 TADA2AO75478 443 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 ZBTB7AO95365 584 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 OPN1MWP04001 364 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 GNAI2P04899 355 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 PCCAP05165 728 aaPredicted RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 URODP06132 367 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 UBTFL1P0CB47 393 aaPredicted RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 OPN1MW2P0DN77 364 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 OPN1MW3P0DN78 364 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 GHRP10912 638 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 PTPN3P26045 913 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 RPL10P27635 214 aaKnown RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 ADRA1BP35368 520 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 CD151P48509 253 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 CAMLGP49069 296 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 LIG4P49917 911 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 WNT3AP56704 352 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 UFM1P61960 85 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 POU6F2P78424 691 aaPredicted RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 BEX3Q00994 111 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 NPRL3Q12980 569 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 TUBB2AQ13885 445 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 CAPSQ13938 189 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 GPR162Q16538 588 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 LEXMQ3ZCV2 418 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 BOLA3Q53S33 107 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 HSP90B2PQ58FF3 399 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 MANEALQ5VSG8 457 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 HLA-DQA1Q5Y7H0 255 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 LINC00696Q6ZRV3 163 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM83AQ86UY5 434 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 HDDC3Q8N4P3 179 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 C8orf58Q8NAV2 365 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 PIWIL2Q8TC59 973 aaKnown RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 FAM216AQ8WUB2 273 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 SNX33Q8WV41 574 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 WDR60Q8WVS4 1066 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 ZDHHC12Q96GR4 267 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 HRASLS5Q96KN8 279 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 HEXIM2Q96MH2 286 aaKnown RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 SRSF8Q9BRL6 282 aaKnown RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 SYT17Q9BSW7 474 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 TUBB2BQ9BVA1 445 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 TRIM7Q9C029 511 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 SLC25A32Q9H2D1 315 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 UNKLQ9H9P5 680 aaKnown RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 POLR1BQ9H9Y6 1135 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 SCPEP1Q9HB40 452 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 MAGEE1Q9HCI5 957 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 DDX18Q9NVP1 670 aaKnown RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 BEX4Q9NWD9 120 aaPredicted RBP5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 XPR1Q9UBH6 696 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 EXTL2Q9UBQ6 330 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 IL19Q9UHD0 177 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 TUBE1Q9UJT0 475 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 VAV3Q9UKW4 847 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 AGAP1Q9UPQ3 857 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 PCDHB4Q9Y5E5 795 aa5.4□□□□□ -1.54
VPS35P1-201ENST00000563400 PNPLA7Q6ZV29 1317 aa5.4□□□□□ -1.55
VPS35P1-201ENST00000563400 ATP10DQ9P241 1426 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CTAGE9A4FU28 777 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 FAM90A7PA6NKC0 464 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SH2D7A6NKC9 451 aaPredicted RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 FAM90A22PA8MWA6 464 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 FAM90A12PA8MX19 464 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 FAM90A23PA8MXZ1 464 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 SGK1O00141 431 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 VWA5AO00534 786 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 GRM6O15303 877 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 PRPF4O43172 522 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 ADAMTS4O75173 837 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 CEACAM5P06731 702 aa5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 LTA4HP09960 611 aaKnown RBP5.39□□□□□ -1.55
VPS35P1-201ENST00000563400 GAAP10253 952 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms