RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CIPCQ9C0C6 399 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 ARHGEF3Q9NR81 526 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 ELOVL2Q9NXB9 296 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 HCN2Q9UL51 889 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 CA14Q9ULX7 337 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 HPCAL4Q9UM19 191 aa16.92■□□□□ 0.3
VPS4A-202ENST00000562754 TBC1D3BA6NDS4 549 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 ZSCAN5CA6NGD5 496 aaPredicted RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 MATN3O15232 486 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 KCNN4O15554 427 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 MT-CO1P00395 513 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 POLR2EP19388 210 aaKnown RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 CHRNA3P32297 505 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 IFI35P80217 286 aaPredicted RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 WASHC5Q12768 1159 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 EIF4HQ15056 248 aaKnown RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 PTPRNQ16849 979 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 TMCO4Q5TGY1 634 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 HEATR6Q6AI08 1181 aaKnown RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 TIGD7Q6NT04 549 aaPredicted RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 CCDC137Q6PK04 289 aaKnown RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 SUGP1Q8IWZ8 645 aaKnown RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 USP33Q8TEY7 942 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 HTR3CQ8WXA8 447 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 MRGPRX3Q96LB0 322 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 KRT12Q99456 494 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 CEP41Q9BYV8 373 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 SEPT10Q9P0V9 454 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 UBA2Q9UBT2 640 aaPredicted RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 ERVW-1Q9UQF0 538 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 ZNF148Q9UQR1 794 aa16.91■□□□□ 0.3
VPS4A-202ENST00000562754 DRG1Q9Y295 367 aaKnown RBP16.91■□□□□ 0.3
VPS4A-202ENST00000562754 MYO18AQ92614 2054 aaKnown RBP16.9■□□□□ 0.3
VPS4A-202ENST00000562754 A0A0A0MRY4 1105 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CTAGE15A4D2H0 777 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CFAP69A5D8W1 941 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 KRBA1A5PL33 1030 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 K7ERQ8 282 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 RNF103O00237 685 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 TMCC1O94876 653 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 EGFP01133 1207 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 ASLP04424 464 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 DLDP09622 509 aaKnown RBP16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CTAGE8P0CG41 777 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 PTPN3P26045 913 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 SERPINH1P50454 418 aaKnown RBP16.9■□□□□ 0.3
VPS4A-202ENST00000562754 ECT2LQ008S8 904 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 SULT2A1Q06520 285 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 SLC10A7Q0GE19 358 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 PRUNE1Q86TP1 453 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CTAGE6Q86UF2 777 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CTAGE4Q8IX94 777 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 UBALD2Q8IYN6 164 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 ALLCQ8N6M5 410 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CEP112Q8N8E3 955 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 FAM71DQ8N9W8 422 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 GLIS1Q8NBF1 620 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 MNS1Q8NEH6 495 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 RTP4Q96DX8 246 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 MYO19Q96H55 970 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 RPL10LQ96L21 214 aaKnown RBP16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CCDC114Q96M63 670 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 ZNF599Q96NL3 588 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 IL12RB2Q99665 862 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 WNT16Q9UBV4 365 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 PCYOX1Q9UHG3 505 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 HS3ST2Q9Y278 367 aa16.9■□□□□ 0.3
VPS4A-202ENST00000562754 CXorf51AA0A1B0GTR3 108 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 K7EQS6 105 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 SGK1O00141 431 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 MTSS1O43312 755 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 SMAD6O43541 496 aaKnown RBP16.89■□□□□ 0.29
VPS4A-202ENST00000562754 JCHAINP01591 159 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 SRCP12931 536 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 CCNB1P14635 433 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 CD72P21854 359 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 PTGIRP43119 386 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 HNRNPDQ14103 355 aaKnown RBP16.89■□□□□ 0.29
VPS4A-202ENST00000562754 LBRQ14739 615 aaKnown RBP16.89■□□□□ 0.29
VPS4A-202ENST00000562754 CYTH1Q15438 398 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 PREPLQ4J6C6 727 aaPredicted RBP16.89■□□□□ 0.29
VPS4A-202ENST00000562754 EGFLAMQ63HQ2 1017 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 RETSATQ6NUM9 610 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 CCDC105Q8IYK2 499 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 SH2D3CQ8N5H7 860 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 TEX26Q8N6G2 289 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 CNTD1Q8N815 330 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 NOA1Q8NC60 698 aaKnown RBP16.89■□□□□ 0.29
VPS4A-202ENST00000562754 ATL2Q8NHH9 583 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 FAM3CQ92520 227 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 LHX3Q9UBR4 397 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 AMACRQ9UHK6 382 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 SLCO3A1Q9UIG8 710 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 SLC25A13Q9UJS0 675 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 FBXL21Q9UKT6 434 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 FCF1Q9Y324 198 aaKnown RBP16.89■□□□□ 0.29
VPS4A-202ENST00000562754 ATG2BQ96BY7 2078 aa16.89■□□□□ 0.29
VPS4A-202ENST00000562754 MUSKO15146 869 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 TIMM44O43615 452 aa16.88■□□□□ 0.29
VPS4A-202ENST00000562754 HLA-DQB2P05538 268 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms