RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ATP6V0D1P61421 351 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 GRSF1Q12849 480 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP3-206ENST00000558157 PPP2R5DQ14738 602 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 PPM1NQ8N819 430 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 RP9Q8TA86 221 aaKnown RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 TAMM41Q96BW9 452 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 LRRC39Q96DD0 335 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 IMPG2Q9BZV3 1241 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 ARMC7Q9H6L4 198 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 TMEM134Q9H6X4 195 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 IFT52Q9Y366 437 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 CDY2AQ9Y6F7 541 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 CDY1Q9Y6F8 540 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 NRCAMQ92823 1304 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 LOC100653049A0A140TA62 436 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 A0A1B0GTW7 788 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 C7orf72A4D263 438 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 KRBA1A5PL33 1030 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 K7ERI5 159 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 ZNF195O14628 629 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 NDUFB5O43674 189 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 GCATO75600 419 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 KRT34O76011 436 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 LDHAP00338 332 aaKnown RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 FGF3P11487 239 aaPredicted RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 HARS2P49590 506 aaKnown RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 THOP1P52888 689 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 PRMT2P55345 433 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 NKX3-2P78367 333 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 TAP1Q03518 808 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 SCARA3Q6AZY7 606 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 ANKRD26P1Q6NSI1 321 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 TMEM214Q6NUQ4 689 aaKnown RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 CXCL17Q6UXB2 119 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 TTC30AQ86WT1 665 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 IGDCC3Q8IVU1 814 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 ZBTB8OSQ8IWT0 167 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 CTAGE3PQ8IX95 158 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 BHLHE22Q8NFJ8 381 aaPredicted RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 MTG1Q9BT17 334 aaPredicted RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 NDEL1Q9GZM8 345 aa11.08□□□□□ -0.64
USP3-206ENST00000558157 TRIP12Q14669 1992 aaPredicted RBP11.08□□□□□ -0.64
USP3-206ENST00000558157 DCXO43602 365 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 KPNA6O60684 536 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 GLRA3O75311 464 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 GRK4P32298 578 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 GNL1P36915 607 aaPredicted RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 LIG4P49917 911 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 NOMO3P69849 1222 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 GALNT2Q10471 571 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 PDE1CQ14123 709 aaPredicted RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 PIGHQ14442 188 aaPredicted RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 HERC3Q15034 1050 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 LINC00299Q6ZSB3 139 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 BBS12Q6ZW61 710 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 MAVSQ7Z434 540 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 IQCF2Q8IXL9 164 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 DSELQ8IZU8 1212 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 PACRGLQ8N7B6 248 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 NIPA2Q8N8Q9 360 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 ACTL9Q8TC94 416 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 ATP2A3Q93084 1043 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 DUS3LQ96G46 650 aaKnown RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 C2orf40Q9H1Z8 148 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 MRPL46Q9H2W6 279 aaKnown RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 TCRBV7S3A2A0A539 114 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 C17orf102A2RUQ5 167 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 GOLGA8IPA6NC78 632 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 TMEM191CA6NGB0 347 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 GOLGA8JA6NMD2 632 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 PARNO95453 639 aaKnown RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 GSRP00390 522 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 PIGRP01833 764 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 PRKCBP05771 671 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 TMEM191BP0C7N4 346 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 XRCC1P18887 633 aaPredicted RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 EPHA3P29320 983 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 NUDT2P50583 147 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 EFNA5P52803 228 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 OTUD4Q01804 1114 aaKnown RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 DPYSL3Q14195 570 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 KCNJ8Q15842 424 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 CYP2A13Q16696 494 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 LSM12Q3MHD2 195 aaKnown RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 AGAP7PQ5VUJ5 663 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 KIAA0319LQ8IZA0 1049 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 PHTF2Q8N3S3 785 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 KLHDC9Q8NEP7 349 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 POMGNT1Q8WZA1 660 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 CDRT15Q96T59 188 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 UHRF1Q96T88 793 aaPredicted RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 C11orf70Q9BRQ4 267 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 TARS2Q9BW92 718 aaKnown RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 FAM49AQ9H0Q0 323 aaPredicted RBP11.07□□□□□ -0.64
USP3-206ENST00000558157 COQ10BQ9H8M1 238 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 WBP1LQ9NX94 342 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 CDC14AQ9UNH5 594 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 CARD8Q9Y2G2 431 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 NOX1Q9Y5S8 564 aa11.07□□□□□ -0.64
USP3-206ENST00000558157 CEP350Q5VT06 3117 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms