RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 MPP1Q00013 466 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 ADGRE1Q14246 886 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 POU6F1Q14863 301 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 LCLAT1Q6UWP7 414 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 RNF169Q8NCN4 708 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 MCUQ8NE86 351 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 SPATA22Q8NHS9 363 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 RTP4Q96DX8 246 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 QKIQ96PU8 341 aaKnown RBP eCLIP12.56□□□□□ -0.4
LDLR-205ENST00000557933 PDZD7Q9H5P4 517 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 NOL11Q9H8H0 719 aaKnown RBP12.56□□□□□ -0.4
LDLR-205ENST00000557933 DNAJC28Q9NX36 388 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 ARHGEF38Q9NXL2 777 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 MAP3K20Q9NYL2 800 aaKnown RBP12.56□□□□□ -0.4
LDLR-205ENST00000557933 RIMS3Q9UJD0 308 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 TBC1D30Q9Y2I9 924 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 PCDHB12Q9Y5F1 795 aa12.56□□□□□ -0.4
LDLR-205ENST00000557933 AURKAO14965 403 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 TRIM13O60858 407 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 TIPRLO75663 272 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 VAPBO95292 243 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 INSRRP14616 1297 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 PGAM1P18669 254 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 ADIGQ0VDE8 80 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 USP10Q14694 798 aaKnown RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 ZNF423Q2M1K9 1284 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 NOMO2Q5JPE7 1267 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 SEL1L3Q68CR1 1132 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 GADL1Q6ZQY3 521 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 KBTBD7Q8WVZ9 684 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 GPR20Q99678 358 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 FERMT1Q9BQL6 677 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 ZNF670Q9BS34 389 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 STK39Q9UEW8 545 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 RUVBL2Q9Y230 463 aaKnown RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 ZBTB24O43167 697 aaPredicted RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 GRK2P25098 689 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 PTK2BQ14289 1009 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 MXD4Q14582 209 aaPredicted RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 FSCBQ5H9T9 825 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 MAP3K21Q5TCX8 1036 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 XRRA1Q6P2D8 792 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 CATSPERGQ6ZRH7 1159 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 OTOP3Q7RTS5 596 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 JADE3Q92613 823 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 PHF21BQ96EK2 531 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 VPS39Q96JC1 886 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 FZD8Q9H461 694 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 FBRSL1Q9HCM7 1045 aaKnown RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 XPR1Q9UBH6 696 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 DNAJB4Q9UDY4 337 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 VANGL2Q9ULK5 521 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 PTGDR2Q9Y5Y4 395 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 CDY2AQ9Y6F7 541 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 CDY1Q9Y6F8 540 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 MKI67P46013 3256 aaKnown RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 E7ENX8 843 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 M0QYT0 321 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 FAM58BPP0C7Q3 252 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 PROZP22891 400 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 RGS2P41220 211 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 HARS2P49590 506 aaKnown RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 SH2D4BQ5SQS7 431 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 ARHGAP17Q68EM7 881 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 LRRC8BQ6P9F7 803 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 METTL7BQ6UX53 244 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 PDCD6IPQ8WUM4 868 aaKnown RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 LRCH3Q96II8 777 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 TMEM79Q9BSE2 394 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 ILKAPQ9H0C8 392 aaPredicted RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 PIF1Q9H611 641 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 TRPC7Q9HCX4 862 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 CHST12Q9NRB3 414 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 EPS15L1Q9UBC2 864 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 RNF11Q9Y3C5 154 aa12.55□□□□□ -0.4
LDLR-205ENST00000557933 COPG1Q9Y678 874 aaKnown RBP12.55□□□□□ -0.4
LDLR-205ENST00000557933 XIRP2A4UGR9 3374 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 IGKV6D-21A0A0A0MT36 114 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 ZNF839A8K0R7 811 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 I6L893 689 aaPredicted RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 GRID2O43424 1007 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 MT-CYBP00156 380 aaPredicted RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 TPSB2P20231 275 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 TKTP29401 623 aaKnown RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 YAP1P46937 504 aaKnown RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 NDST2P52849 883 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 ADARP55265 1226 aaKnown RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 PPIDQ08752 370 aaKnown RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 MPP3Q13368 585 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 PDAP1Q13442 181 aaKnown RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 TPSAB1Q15661 275 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 MOB2Q70IA6 237 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 KCNMB4Q86W47 210 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 RNF139Q8WU17 664 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 EDEM1Q92611 657 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 EMID1Q96A84 441 aaPredicted RBP12.54□□□□□ -0.4
LDLR-205ENST00000557933 LRRC39Q96DD0 335 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 RBBP8Q99708 897 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 RTKNQ9BST9 563 aa12.54□□□□□ -0.4
LDLR-205ENST00000557933 EGFL7Q9UHF1 273 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms