RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 ZDHHC2Q9UIJ5 367 aa12.02□□□□□ -0.48
VIPAS39-211ENST00000557658 SLC39A10Q9ULF5 831 aa12.02□□□□□ -0.48
VIPAS39-211ENST00000557658 AKT3Q9Y243 479 aa12.02□□□□□ -0.48
VIPAS39-211ENST00000557658 AK5Q9Y6K8 562 aa12.02□□□□□ -0.48
VIPAS39-211ENST00000557658 STX16-NPEPL1H3BU86 382 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 KCNK1O00180 336 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 RNASEH2AO75792 299 aaKnown RBP12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 DDHD2O94830 711 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 SLC5A2P31639 672 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 CCR10P46092 362 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 RPL34P49207 117 aaKnown RBP12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 NAGLUP54802 743 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 NSUN2Q08J23 767 aaKnown RBP eCLIP12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 ZNF484Q5JVG2 852 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 DEFB106AQ8N104 65 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 TSPAN14Q8NG11 270 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 GFM2Q969S9 779 aaKnown RBP12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 MOCOSQ96EN8 888 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 MFSD3Q96ES6 412 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 DPEP3Q9H4B8 488 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 MRPL40Q9NQ50 206 aaKnown RBP12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 ACSS2Q9NR19 701 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 IARS2Q9NSE4 1012 aaKnown RBP12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 CEPT1Q9Y6K0 416 aa12.02□□□□□ -0.49
VIPAS39-211ENST00000557658 ERI2A8K979 691 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 H3BSA7 217 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 ZNF26P17031 533 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 CDH2P19022 906 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 PTPN3P26045 913 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 NPY2RP49146 381 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 KIZQ2M2Z5 673 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 MGAT5BQ3V5L5 792 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 SH3D19Q5HYK7 790 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 PDZD4Q76G19 769 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 CHERPQ8IWX8 916 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 TRIML2Q8N7C3 387 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 MIPOL1Q8TD10 442 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 FAM149B1Q96BN6 582 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 ASB9Q96DX5 294 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 KLRG1Q96E93 195 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 HSFY1Q96LI6 401 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 GPR22Q99680 433 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 NPAS2Q99743 824 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 CCT7Q99832 543 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 SPATC1LQ9H0A9 340 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 DNAAF2Q9NVR5 837 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 NSMCE4AQ9NXX6 385 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 ERAP1Q9NZ08 941 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 ADA2Q9NZK5 511 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 HES2Q9Y543 173 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 COPG1Q9Y678 874 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 PLXNA1Q9UIW2 1896 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 A0A0J9YVX5 310 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 TCAF2A6NFQ2 919 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 EEF2KO00418 725 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 PPEF2O14830 753 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 ZNF23P17027 643 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 TCN1P20061 433 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 PCSK6P29122 969 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 GMPSP49915 693 aaPredicted RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 TXNL4AP83876 142 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 ITGA7Q13683 1181 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 GRM3Q14832 879 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 CYTH1Q15438 398 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 CERCAMQ5T4B2 595 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 IL23RQ5VWK5 629 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 PAOXQ6QHF9 649 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 TMEM151AQ8N4L1 468 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 ACVR1CQ8NER5 493 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 CEP70Q8NHQ1 597 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 STYXQ8WUJ0 223 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 GAB3Q8WWW8 586 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 MARK4Q96L34 752 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 MCMBPQ9BTE3 642 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 C1QTNF1Q9BXJ1 281 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 SETD4Q9NVD3 440 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 UTP6Q9NYH9 597 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 RSL24D1Q9UHA3 163 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 RUVBL2Q9Y230 463 aaKnown RBP12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 AP4S1Q9Y587 144 aa12.01□□□□□ -0.49
VIPAS39-211ENST00000557658 WDR90Q96KV7 1748 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 hCG_2014768A0A024R1R8 64 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 SYNJ2BP-COX16A0A087WUM0 186 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 ARHGEF37A1IGU5 675 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 SOCS7O14512 581 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 TSPAN1O60635 241 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 SBK3P0C264 359 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 CYP2C9P11712 490 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 INSRRP14616 1297 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 SAT1P21673 171 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 GRM5P41594 1212 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 ADARP55265 1226 aaKnown RBP12□□□□□ -0.49
VIPAS39-211ENST00000557658 PSME3P61289 254 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 USP10Q14694 798 aaKnown RBP12□□□□□ -0.49
VIPAS39-211ENST00000557658 TREML2Q5T2D2 321 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 COPS5Q92905 334 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 ZNF597Q96LX8 424 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 OSBPL11Q9BXB4 747 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 TMPRSS4Q9NRS4 437 aa12□□□□□ -0.49
VIPAS39-211ENST00000557658 COX16Q9P0S2 106 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms