RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 PLXNA1Q9UIW2 1896 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 PTPRFP10586 1907 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 TRIM38O00635 465 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 GRID2O43424 1007 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 TSPAN1O60635 241 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 MPSTP25325 297 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 NOS2P35228 1153 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 GRIA4P48058 902 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 ZNF135P52742 658 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 MYBPC1Q00872 1141 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 NSUN2Q08J23 767 aaKnown RBP eCLIP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 MAPRE2Q15555 327 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 IRAK1BP1Q5VVH5 260 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 KCNMB4Q86W47 210 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 BHLHE22Q8NFJ8 381 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 NT5C3BQ969T7 300 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 RCN3Q96D15 328 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 LRRC4Q9HBW1 653 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 SETD4Q9NVD3 440 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 SUCOQ9UBS9 1254 aaKnown RBP16.57■□□□□ 0.24
SHMT2-232ENST00000557487 AKT3Q9Y243 479 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 SQORQ9Y6N5 450 aa16.57■□□□□ 0.24
SHMT2-232ENST00000557487 ACOT8O14734 319 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 XPO1O14980 1071 aaKnown RBP16.56■□□□□ 0.24
SHMT2-232ENST00000557487 DCLK1O15075 740 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 PIGNO95427 931 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 CCDC166P0CW27 439 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 LCP1P13796 627 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 INSRRP14616 1297 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 PTPN3P26045 913 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 IREB2P48200 963 aaKnown RBP16.56■□□□□ 0.24
SHMT2-232ENST00000557487 HCAR3P49019 387 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 CEACAM7Q14002 265 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 TTLL4Q14679 1199 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 UGP2Q16851 508 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 TBC1D25Q3MII6 688 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 KCTD11Q693B1 232 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 FAM131BQ86XD5 332 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 PYROXD2Q8N2H3 581 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 METTL25Q8N6Q8 603 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 DNAAF3Q8N9W5 541 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 CLEC4CQ8WTT0 213 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 STYXQ8WUJ0 223 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 NLRP7Q8WX94 980 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 ASB9Q96DX5 294 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 FAR2Q96K12 515 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 CNBD2Q96M20 576 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 RHOJQ9H4E5 214 aa16.56■□□□□ 0.24
SHMT2-232ENST00000557487 COPS7BQ9H9Q2 264 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-232ENST00000557487 FAM155AB1AL88 458 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 EEF2KO00418 725 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 NPHS1O60500 1241 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 PSMC3P17980 439 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 KPNA2P52292 529 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 TXNL4AP83876 142 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 PPIDQ08752 370 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 TRAP1Q12931 704 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 SLC12A1Q13621 1099 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 ZBTB6Q15916 424 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 ARL13AQ5H913 290 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 CES3Q6UWW8 571 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 DEFB106AQ8N104 65 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 TMEM102Q8N9M5 508 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 ZFP28Q8NHY6 868 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 DUS3LQ96G46 650 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 TSPAN18Q96SJ8 248 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 OSBPL11Q9BXB4 747 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 C1QTNF1Q9BXJ1 281 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 SENP6Q9GZR1 1112 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 GBA3Q9H227 469 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 TASP1Q9H6P5 420 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 WDR55Q9H6Y2 383 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 C20orf96Q9NUD7 363 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 RALGAPA2Q2PPJ7 1873 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 F5H423 210 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 LTFP02788 710 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 C8BP07358 591 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 SLC10A3P09131 477 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 ENO3P13929 434 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 CYP2B6P20813 491 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 RANBP1P43487 201 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 ZNF157P51786 506 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 HPCAP84074 193 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 IRF9Q00978 393 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 MYLK3Q32MK0 819 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 C7orf31Q8N865 590 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 MIPOL1Q8TD10 442 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 NTAN1Q96AB6 310 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 MAELQ96JY0 434 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 SNX27Q96L92 541 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 NPY6RQ99463 290 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 AGAP2Q99490 1192 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 PKP2Q99959 881 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 MRPL1Q9BYD6 325 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 MAGEB5Q9BZ81 275 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 PIH1D1Q9NWS0 290 aaKnown RBP16.55■□□□□ 0.24
SHMT2-232ENST00000557487 NME7Q9Y5B8 376 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 NR2E3Q9Y5X4 410 aa16.55■□□□□ 0.24
SHMT2-232ENST00000557487 CITO14578 2027 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 CCDC160A6NGH7 325 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms